The missing link between thermodynamics and structure in F1-ATPase (Q34327927)

1 August 2017

The missing link between thermodynamics and structure in F1-ATPase (English)

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1 August 2017

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5

Karplus M

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1 August 2017

Yang W

1

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1 August 2017

Gao YQ

series ordinal

2

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1 August 2017

Cui Q

series ordinal

3

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1 August 2017

Ma J

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4

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1 August 2017

language of work or name

English

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publication date

27 January 2003

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Proceedings of the National Academy of Sciences of the United States of America

1 August 2017

6

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based on heuristic

inferred from page(s)

published in

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1 August 2017

100

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1 August 2017

3

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1 August 2017

874-879

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All-atom empirical potential for molecular modeling and dynamics studies of proteins

1 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=298694

Free energy simulations come of age: protein-ligand recognition

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=298694

Nanoseconds molecular dynamics simulation of primary mechanical energy transfer steps in F1-ATP synthase

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=298694

Uracil-DNA glycosylase acts by substrate autocatalysis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=298694

Structure of bovine mitochondrial F(1)-ATPase with nucleotide bound to all three catalytic sites: implications for the mechanism of rotary catalysis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=298694

Triosephosphate isomerase: a theoretical comparison of alternative pathways

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=298694

The structure of the central stalk in bovine F(1)-ATPase at 2.4 A resolution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=298694

Structure of bovine mitochondrial F(1)-ATPase inhibited by Mg(2+) ADP and aluminium fluoride

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=298694

Molecular architecture of the rotary motor in ATP synthase

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=298694

Rotational coupling in the F0F1 ATP synthase

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=298694

Energy transduction in the F1 motor of ATP synthase

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=298694

The ATP synthase--a splendid molecular machine

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=298694

Catalytic mechanism of F1-ATPase

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=298694

Direct observation of the rotation of F1-ATPase

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=298694

Structure at 2.8 A resolution of F1-ATPase from bovine heart mitochondria

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=298694

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=298694

"Squiggle-H2O". An enquiry into the importance of solvation effects in phosphate ester and anhydride reactions.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=298694

Molecular dynamics simulations of cooling in laser-excited heme proteins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=298694

Active site dynamics in protein molecules: a stochastic boundary molecular-dynamics approach.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=298694

pKa's of ionizable groups in proteins: atomic detail from a continuum electrostatic model

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=298694

The P-loop--a common motif in ATP- and GTP-binding proteins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=298694

Structure of the triosephosphate isomerase-phosphoglycolohydroxamate complex: an analogue of the intermediate on the reaction pathway

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=298694

Simulation analysis of the stability mutant R96H of T4 lysozyme.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=298694

Catalytic sites of Escherichia coli F1-ATPase. Characterization of unisite catalysis at varied pH.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=298694

Catalytic sites of Escherichia coli F1-ATPase

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=298694

Further examination of seventeen mutations in Escherichia coli F1-ATPase beta-subunit

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=298694

Comparison of simple potential functions for simulating liquid water

6 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0337432100

Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0337432100

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0337432100

Molecular recognition in proteins. Simulation analysis of substrate binding by a tyrosyl-tRNA synthetase mutant.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0337432100

Energy, Life, and ATP (Nobel Lecture)

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0337432100

Rate constants and equilibrium constants for the elementary steps of ATP hydrolysis by beef heart mitochondrial ATPase

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0337432100

Hidden thermodynamics of mutant proteins: a molecular dynamics analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0337432100

Mg2+ coordination in catalytic sites of F1-ATPase

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0337432100

Simulation of activation free energies in molecular systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0337432100

Solvent effects on protein motion and protein effects on solvent motion. Dynamics of the active site region of lysozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0337432100

Importance of F1-ATPase residue alpha-Arg-376 for catalytic transition state stabilization

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0337432100

Escherichia coli ATP synthase alpha subunit Arg-376: the catalytic site arginine does not participate in the hydrolysis/synthesis reaction but is required for promotion to the steady state

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0337432100

A dynamic analysis of the rotation mechanism for conformational change in F(1)-ATPase

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0337432100

ATP Synthesis by Rotary Catalysis (Nobel lecture)

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12552084

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Computer simulation and analysis of the reaction pathway of triosephosphate isomerase

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1073/PNAS.0337432100

Identifiers

DOI

10.1073/PNAS.0337432100

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1 August 2017

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1 August 2017

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