Extended local similarity analysis (eLSA) of microbial community and other time series data with replicates (Q34333424)

1 August 2017

Extended local similarity analysis (eLSA) of microbial community and other time series data with replicates (English)

1 reference

1 August 2017

2

Joshua A Steele

1 reference

1 August 2017

Jacob A Cram

3

0 references

Zoe G Cardon

Zoe G Cardon

4

0 references

Li Xia

Li C Xia

1

0 references

Joseph J. Vallino

Joseph J Vallino

6

0 references

Jed A. Fuhrman

7

Jed A Fuhrman

1 reference

1 August 2017

Sheri L Simmons

5

1 reference

PubMed ID

22784572

1 August 2017

Fengzhu Sun

8

1 reference

1 August 2017

14 December 2011

1 reference

1 August 2017

1 reference

1 August 2017

5 Suppl 2

1 reference

1 August 2017

S15

1 reference

PubMed ID

22784572

describes a project that uses

1 August 2017

Cytoscape

Cytoscape

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

Cytoscape

0 references

exact match

https://scigraph.springernature.com/pub.10.1186/1752-0509-5-s2-s15

0 references

cites work

Marine bacterial, archaeal and protistan association networks reveal ecological linkages.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287481

Temporal patterns in glycolate-utilizing bacterial community composition correlate with phytoplankton population dynamics in humic lakes.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287481

Importance of replication in analyzing time-series gene expression data: corticosteroid dynamics and circadian patterns in rat liver

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287481

A global network of coexisting microbes from environmental and whole-genome sequence data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287481

Microbial community structure and its functional implications

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287481

Genome-scale cluster analysis of replicated microarrays using shrinkage correlation coefficient

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287481

On gene ranking using replicated microarray time course data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287481

Integration of biological networks and gene expression data using Cytoscape

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287481

Multivariate correlation estimator for inferring functional relationships from replicated genome-wide data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287481

Discovery of Time-Delayed Gene Regulatory Networks based on temporal gene expression profiling

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287481

Geographic and environmental sources of variation in lake bacterial community composition

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287481

Clustering of gene expression data using a local shape-based similarity measure

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287481

The molecular mechanics of eukaryotic translation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287481

Analyzing time series gene expression data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287481

Within- and between-lake variability in the composition of bacterioplankton communities: investigations using multiple spatial scales.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287481

Statistical significance for genomewide studies

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287481

Genome-wide coexpression dynamics: theory and application

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287481

Importance of replication in microarray gene expression studies: statistical methods and evidence from repetitive cDNA hybridizations

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287481

Modelling covariance structure in the analysis of repeated measures data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287481

Automated approach for ribosomal intergenic spacer analysis of microbial diversity and its application to freshwater bacterial communities.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287481

6 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1752-0509-5-S2-S15

Differential bacterial dynamics promote emergent community robustness to lake mixing: an epilimnion to hypolimnion transplant experiment

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1752-0509-5-S2-S15

Global analysis of dauer gene expression in Caenorhabditis elegans.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1752-0509-5-S2-S15

Efficiently mining time-delayed gene expression patterns.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287481

10.1186/1752-0509-5-S2-S15

27 October 2018

Identifiers

DOI

1 reference

journals/bmcsb/XiaSCCSVFS11

1 August 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

1 August 2017

1 reference

PubMed ID

22784572