Probing the local dynamics of nucleotide-binding pocket coupled to the global dynamics: myosin versus kinesin. (Q34350367)

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11 January 2020

title

Probing the local dynamics of nucleotide-binding pocket coupled to the global dynamics: myosin versus kinesin (English)

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11 January 2020

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1

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11 January 2020

author name string

Bernard R Brooks

series ordinal

2

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11 January 2020

language of work or name

English

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publication date

6 May 2005

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11 January 2020

number of pages

12

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based on heuristic

inferred from page(s)

published in

Biophysical Journal

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11 January 2020

volume

89

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11 January 2020

issue

1

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11 January 2020

page(s)

167-178

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Analysis of functional motions in Brownian molecular machines with an efficient block normal mode approach: myosin-II and Ca2+ -ATPase

11 January 2020

cites work

1 reference

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A comparative study of motor-protein motions by using a simple elastic-network model

6 July 2018

1 reference

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Electron cryo-microscopy shows how strong binding of myosin to actin releases nucleotide

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366515

A structural state of the myosin V motor without bound nucleotide

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366515

Simplified normal mode analysis of conformational transitions in DNA-dependent polymerases: the elastic network model

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366515

Kinesin: switch I & II and the motor mechanism

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366515

Structure of a fast kinesin: implications for ATPase mechanism and interactions with microtubules

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366515

A structural pathway for activation of the kinesin motor ATPase.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366515

Switch-based mechanism of kinesin motors

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366515

Myosin motors: missing structures and hidden springs.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366515

Conformational change of proteins arising from normal mode calculations

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366515

Molecular dynamics study of the energetic, mechanistic, and structural implications of a closed phosphate tube in ncd

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366515

Anisotropy of fluctuation dynamics of proteins with an elastic network model

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366515

Three conformational states of scallop myosin S1

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366515

Structural mechanism of muscle contraction.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366515

The way things move: looking under the hood of molecular motor proteins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366515

Motor proteins of the kinesin family. Structures, variations, and nucleotide binding sites

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366515

Nucleotide-dependent movements of the kinesin motor domain predicted by simulated annealing.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366515

Systematic analysis of domain motions in proteins from conformational change: new results on citrate synthase and T4 lysozyme

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366515

Crystal structure of the kinesin motor domain reveals a structural similarity to myosin

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366515

Quasi-harmonic method for studying very low frequency modes in proteins.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366515

Myosin flexibility: structural domains and collective vibrations.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366515

A structural model for actin-induced nucleotide release in myosin

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366515

Closing of the Nucleotide Pocket of Kinesin-Family Motors upon Binding to Microtubules

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366515

Evidence for cleft closure in actomyosin upon ADP release

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366515

Analysis of domain motions by approximate normal mode calculations.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366515

Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366515

Identification of dynamical correlations within the myosin motor domain by the normal mode analysis of an elastic network model

27 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15879477

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1529/BIOPHYSJ.105.063305

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15879477%20AND%20SRC:MED&resulttype=core&format=json

11 January 2020

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15879477%20AND%20SRC:MED&resulttype=core&format=json

11 January 2020

PubMed publication ID

15879477

1 reference