Exploring the complex folding kinetics of RNA hairpins: I. General folding kinetics analysis. (Q34353188)

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8 January 2020

title

Exploring the complex folding kinetics of RNA hairpins: I. General folding kinetics analysis (English)

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8 January 2020

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2

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8 January 2020

author name string

Wenbing Zhang

series ordinal

1

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8 January 2020

language of work or name

English

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publication date

4 November 2005

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8 January 2020

number of pages

13

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inferred from page(s)

published in

Biophysical Journal

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8 January 2020

volume

90

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8 January 2020

issue

3

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8 January 2020

page(s)

765-777

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Analyzing the biopolymer folding rates and pathways using kinetic cluster method

8 January 2020

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Master equation approach to finding the rate-limiting steps in biopolymer folding.

6 July 2018

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Folding thermodynamics and kinetics of YNMG RNA hairpins: specific incorporation of 8-bromoguanosine leads to stabilization by enhancement of the folding rate

6 July 2018

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Slow nucleic acid unzipping kinetics from sequence-defined barriers

6 July 2018

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Dynamics of the IRE RNA hairpin loop probed by 2-aminopurine fluorescence and stochastic dynamics simulations

6 July 2018

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Insights into nucleic acid conformational dynamics from massively parallel stochastic simulations

6 July 2018

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RNA folding: models and perspectives

6 July 2018

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Single-Strand Stacking Free Energy from DNA Beacon Kinetics

6 July 2018

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6 July 2018

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RNA hairpin-folding kinetics

6 July 2018

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A semiflexible polymer model applied to loop formation in DNA hairpins

6 July 2018

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Configurational diffusion down a folding funnel describes the dynamics of DNA hairpins

6 July 2018

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Beyond kinetic traps in RNA folding

6 July 2018

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Early events in RNA folding

6 July 2018

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Non-Arrhenius kinetics for the loop closure of a DNA hairpin.

6 July 2018

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2-Aminopurine fluorescence quenching and lifetimes: role of base stacking

6 July 2018

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Enthalpy-entropy compensations in nucleic acids: contribution of electrostriction and structural hydration

6 July 2018

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Recent insights on RNA folding mechanisms from catalytic RNA.

6 July 2018

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Modeling RNA folding paths with pseudoknots: application to hepatitis delta virus ribozyme

6 July 2018

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RNA folding at elementary step resolution

6 July 2018

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RNA folding energy landscapes.

6 July 2018

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Kinetics of conformational fluctuations in DNA hairpin-loops

6 July 2018

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13C relaxation and dynamics of the purine bases in the iron responsive element RNA hairpin

6 July 2018

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A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics

6 July 2018

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Folding dynamics and mechanism of beta-hairpin formation

6 July 2018

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Theory of protein folding: the energy landscape perspective

6 July 2018

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From Levinthal to pathways to funnels

6 July 2018

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Stability of ribonucleic acid double-stranded helices

6 July 2018

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6 July 2018

RNA structure prediction

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Catalysis of RNA cleavage by the Tetrahymena thermophila ribozyme. 2. Kinetic description of the reaction of an RNA substrate that forms a mismatch at the active site

6 July 2018

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Catalysis of RNA cleavage by the Tetrahymena thermophila ribozyme. 1. Kinetic description of the reaction of an RNA substrate complementary to the active site

6 July 2018

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Tetraloops and RNA folding

6 July 2018

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Folding of the GB1 hairpin peptide from discrete path sampling.

6 July 2018

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Does native state topology determine the RNA folding mechanism?

27 October 2018

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Exploration of the transition state for tertiary structure formation between an RNA helix and a large structured RNA.

27 October 2018

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RNA simulations: probing hairpin unfolding and the dynamics of a GNRA tetraloop

27 October 2018

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Transition states and the meaning of Phi-values in protein folding kinetics

27 October 2018

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Reversible unfolding of single RNA molecules by mechanical force

27 October 2018

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The computer simulation of RNA folding pathways using a genetic algorithm.

27 October 2018

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Regeneration of ribonuclease A from the reduced protein. Rate-limiting steps.

27 October 2018

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Relaxation kinetics of dimer formation by self complementary oligonucleotides

27 October 2018

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12 December 2020

Hairpin formation in synthetic oligonucleotides

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12 December 2020

Folding rate dependence on the chain length of RNA-like heteropolymers

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12 December 2020

Thermodynamic and kinetic parameters of an oligonucleotide hairpin helix

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12 December 2020

Sequence dependent rigidity of single stranded DNA

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12 December 2020

Predicting thermodynamic properties of RNA

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12 December 2020

10.1529/BIOPHYSJ.105.062935

Identifiers

DOI

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8 January 2020

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8 January 2020

PubMed publication ID

16272440

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