Molecular clock-like evolution of human immunodeficiency virus type 1. (Q34357919)

1 August 2017

Molecular clock-like evolution of human immunodeficiency virus type 1. (English)

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1 August 2017

Daniel Shriner

3

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James Mullins

series ordinal

7

object named as

James I Mullins

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1 August 2017

5

Gerald H Learn

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1 August 2017

2

David C Nickle

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1 August 2017

Yi Liu

1

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1 August 2017

Mark A Jensen

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4

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1 August 2017

John E Mittler

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6

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1 August 2017

language of work or name

English

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publication date

1 November 2004

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1 August 2017

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1 August 2017

329

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1 August 2017

101-108

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1 August 2017

1

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Neutralism and selectionism: the molecular clock

1 August 2017

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2004.08.014

Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach

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1 reference

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Antiviral pressure exerted by HIV-1-specific cytotoxic T lymphocytes (CTLs) during primary infection demonstrated by rapid selection of CTL escape virus

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1 reference

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Reconstructing genealogies of serial samples under the assumption of a molecular clock using serial-sample UPGMA.

7 January 2021

1 reference

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Evolutionary trees from DNA sequences: A maximum likelihood approach

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https://api.crossref.org/works/10.1016%2FJ.VIROL.2004.08.014

Evidence for positive selection driving the evolution of HIV-1 env under potent antiviral therapy.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2004.08.014

The molecular clock may be an episodic clock

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2004.08.014

Molecular clock of viral evolution, and the neutral theory

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2004.08.014

Statistical tests of models of DNA substitution.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2004.08.014

A likelihood method for the detection of selection and recombination using nucleotide sequences.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2004.08.014

A Likelihood-Ratio Test of Monophyly

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2004.08.014

Phylogenetic methods come of age: testing hypotheses in an evolutionary context

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIROL.2004.08.014

Rates of molecular evolution in RNA viruses: a quantitative phylogenetic analysis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2004.08.014

Transfer of HIV-1-specific cytotoxic T lymphocytes to an AIDS patient leads to selection for mutant HIV variants and subsequent disease progression

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2004.08.014

Timing the ancestor of the HIV-1 pandemic strains

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2004.08.014

Analysis of HIV-1 env gene sequences reveals evidence for a low effective number in the viral population

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2004.08.014

The molecular clock of HIV-1 unveiled through analysis of a known transmission history

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2004.08.014

Dynamics of HIV-1 recombination in its natural target cells

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2004.08.014

An evaluation of the molecular clock hypothesis using mammalian DNA sequences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2004.08.014

Forward mutation rate of human immunodeficiency virus type 1 in a T lymphoid cell line

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2004.08.014

PRIMARY STRUCTURE AND EVOLUTION OF CYTOCHROME C

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2004.08.014

A novel antiviral intervention results in more accurate assessment of human immunodeficiency virus type 1 replication dynamics and T-cell decay in vivo

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2004.08.014

Evidence of HIV-1 adaptation to HLA-restricted immune responses at a population level

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2004.08.014

Importance and detection of virus reservoirs and compartments of HIV infection

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2004.08.014

Selection forces and constraints on retroviral sequence variation.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2004.08.014

Unveiling the Molecular Clock in the Presence of Recombination

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2004.08.014

Selecting models of nucleotide substitution: an application to human immunodeficiency virus 1 (HIV-1).

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2004.08.014

GENIE: estimating demographic history from molecular phylogenies.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2004.08.014

Estimating the rate of molecular evolution: incorporating non-contemporaneous sequences into maximum likelihood phylogenies

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2004.08.014

Rapid production and clearance of HIV-1 and hepatitis C virus assessed by large volume plasma apheresis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2004.08.014

Erratic overdispersion of three molecular clocks: GPDH, SOD, and XDH.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2004.08.014

Immune-mediated positive selection drives human immunodeficiency virus type 1 molecular variation and predicts disease duration.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2004.08.014

Recombination and the molecular clock

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2004.08.014

Pervasive genomic recombination of HIV-1 in vivo

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2004.08.014

Influence of random genetic drift on human immunodeficiency virus type 1 env evolution during chronic infection

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2004.08.014

Selective pressure exerted by immunodominant HIV-1-specific cytotoxic T lymphocyte responses during primary infection drives genetic variation restricted to the cognate epitope

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2004.08.014

Advantage of rare HLA supertype in HIV disease progression

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2004.08.014

Frequency-dependent selection in human immunodeficiency virus type 1.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2004.08.014

Genotypic and phenotypic characterization of HIV-1 patients with primary infection

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2004.08.014

Human immunodeficiency virus type 1 recombination: rate, fidelity, and putative hot spots

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2004.08.014

10.1016/J.VIROL.2004.08.014

7 January 2021

Identifiers

DOI

1 reference

1 August 2017

1 reference