Kinetic analysis of ribozyme-substrate complex formation in yeast (Q34365736)

1 August 2017

title

Kinetic analysis of ribozyme-substrate complex formation in yeast (English)

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1 August 2017

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Ramesh S Yadava

1

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1 August 2017

Elisabeth M Mahen

series ordinal

2

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1 August 2017

Martha J Fedor

series ordinal

3

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1 August 2017

language of work or name

English

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publication date

1 May 2004

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1 August 2017

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1 August 2017

volume

10

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1 August 2017

issue

5

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1 August 2017

page(s)

863-879

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Sequence elements outside the hammerhead ribozyme catalytic core enable intracellular activity

1 August 2017

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6 July 2018

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A large nucleolar U3 ribonucleoprotein required for 18S ribosomal RNA biogenesis

6 July 2018

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6 July 2018

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Precision and functional specificity in mRNA decay

6 July 2018

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Thermodynamic and kinetic properties of short RNA helices: the oligomer sequence AnGCUn

6 July 2018

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High mobility of proteins in the mammalian cell nucleus

6 July 2018

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Structure and function of the hairpin ribozyme

6 July 2018

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Movement and localization of RNA in the cell nucleus.

6 July 2018

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Tertiary structure stabilization promotes hairpin ribozyme ligation

6 July 2018

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Base pairing between U3 small nucleolar RNA and the 5' end of 18S rRNA is required for pre-rRNA processing

6 July 2018

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A small nucleolar RNA:ribozyme hybrid cleaves a nucleolar RNA target in vivo with near-perfect efficiency

6 July 2018

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Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

6 July 2018

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Movement of nuclear poly(A) RNA throughout the interchromatin space in living cells

6 July 2018

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Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs

6 July 2018

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Functional mapping of the U3 small nucleolar RNA from the yeast Saccharomyces cerevisiae

6 July 2018

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Tertiary structure formation in the hairpin ribozyme monitored by fluorescence resonance energy transfer

6 July 2018

1 reference

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Mechanical devices of the spliceosome: motors, clocks, springs, and things

6 July 2018

1 reference

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Kinetics of hairpin ribozyme cleavage in yeast.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370576

Translational Diffusion of Macromolecule-sized Solutes in Cytoplasm and Nucleus

6 July 2018

1 reference

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Real-time monitoring of hairpin ribozyme kinetics through base-specific quenching of fluorescein-labeled substrates.

6 July 2018

1 reference

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Mutational analysis of an essential binding site for the U3 snoRNA in the 5' external transcribed spacer of yeast pre-rRNA.

6 July 2018

1 reference

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Base pairing between U3 and the pre-ribosomal RNA is required for 18S rRNA synthesis.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370576

Sequences That Regulate the Divergent GAL1-GAL10 Promoter in Saccharomyces cerevisiae

6 July 2018

1 reference

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The 3'-terminal sequence of Escherichia coli 16S ribosomal RNA: complementarity to nonsense triplets and ribosome binding sites

6 July 2018

1 reference

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The yeast homologue of U3 snRNA.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370576

Statistical positioning of nucleosomes by specific protein-binding to an upstream activating sequence in yeast

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370576

Characterization of an SNR gene locus in Saccharomyces cerevisiae that specifies both dispensible and essential small nuclear RNAs

6 July 2018

1 reference

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A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370576

Depletion of U3 small nucleolar RNA inhibits cleavage in the 5′ external transcribed spacer of yeast pre-ribosomal RNA and impairs formation of 18S ribosomal RNA

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370576

Substrate sequence effects on "hammerhead" RNA catalytic efficiency

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370576

Mutations at the 3′ splice site can be suppressed by compensatory base changes in U1 snRNA in fission yeast

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370576

Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse cellular functions

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370576

Stability of hairpin ribozyme tertiary structure is governed by the interdomain junction

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370576

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370576

The nucleotide sequence of Saccharomyces cerevisiae chromosome XV.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370576

Kinetics and thermodynamics of intermolecular catalysis by hairpin ribozymes

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370576

Co-operative non-enzymatic base recognition III. Kinetics of the helix—coil transition of the oligoribouridylic · oligoriboadenylic acid system and of oligoriboadenylic acid alone at acidic pH

27 October 2018

1 reference

12 December 2020

Relaxation kinetics of dimer formation by self complementary oligonucleotides

1 reference

12 December 2020

Kinetics of intermolecular cleavage by hammerhead ribozymes

1 reference

12 December 2020

Measurement of mRNA decay rates in Saccharomyces cerevisiae

1 reference

12 December 2020

The kinetic mechanism of the hairpin ribozyme in vivo: influence of RNA helix stability on intracellular cleavage kinetics

1 reference

12 December 2020

Hairpin ribozymes with four-way helical junctions mediate intracellular RNA ligation

1 reference

12 December 2020

Kinetic mechanism of the hairpin ribozyme. Identification and characterization of two nonexchangeable conformations

1 reference

12 December 2020

Use of conditional promoters for expression of heterologous proteins in Saccharomyces cerevisiae

1 reference

12 December 2020

An unusual pH-independent and metal-ion-independent mechanism for hairpin ribozyme catalysis

1 reference

12 December 2020

The internal equilibrium of the hairpin ribozyme: temperature, ion and pH effects

1 reference

12 December 2020

Specificity of esterases. I. Identification of two pancreatic aliesterases

1 reference

12 December 2020

Comparative kinetic analysis of structural variants of the hairpin ribozyme reveals further potential to optimize its catalytic performance.

1 reference

12 December 2020

Identifiers

DOI

10.1261/RNA.5234204

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1 August 2017

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1 August 2017

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