iAPBS: a programming interface to Adaptive Poisson-Boltzmann Solver (APBS). (Q34384158)

1 August 2017

title

iAPBS: a programming interface to Adaptive Poisson-Boltzmann Solver (APBS). (English)

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1 August 2017

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J Andrew McCammon

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1 August 2017

Robert Konecny

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1 August 2017

language of work or name

English

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publication date

1 July 2012

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Computational Science & Discovery

1 August 2017

published in

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1 August 2017

volume

5

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1 August 2017

issue

1

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Biomolecular electrostatics and solvation: a computational perspective

1 August 2017

page(s)

015005

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cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3419494

Web servers and services for electrostatics calculations with APBS and PDB2PQR

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3419494

CHARMM: the biomolecular simulation program

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3419494

6 July 2018

Implicit solvent models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3419494

Assessing implicit models for nonpolar mean solvation forces: the importance of dispersion and volume terms

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3419494

Electrostatic properties of cowpea chlorotic mottle virus and cucumber mosaic virus capsids

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3419494

Scalable molecular dynamics with NAMD

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3419494

Improving implicit solvent simulations: a Poisson-centric view

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3419494

PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3419494

Electrostatics of nanosystems: application to microtubules and the ribosome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3419494

Calculating structures and free energies of complex molecules: combining molecular mechanics and continuum models

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3419494

Classical electrostatics in biology and chemistry

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3419494

Optimizing the Poisson Dielectric Boundary with Explicit Solvent Forces and Energies: Lessons Learned with Atom-Centered Dielectric Functions.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3419494

Ribosome motions modulate electrostatic properties

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3419494

Accelerated Poisson-Boltzmann calculations for static and dynamic systems

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3419494

Poisson–Boltzmann Methods for Biomolecular Electrostatics

27 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22905037

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1088/1749-4699/5/1/015005

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1 August 2017

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1 August 2017

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