Combining peak- and chromatogram-based retention time alignment algorithms for multiple chromatography-mass spectrometry datasets (Q34392856)

1 August 2017

Combining peak- and chromatogram-based retention time alignment algorithms for multiple chromatography-mass spectrometry datasets (English)

1 reference

1 August 2017

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Nils Hoffmann

1

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Mathias Wilhelm

object named as

Mathias Wilhelm

4

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Jens Stoye

7

object named as

Jens Stoye

1 reference

1 August 2017

Matthias Keck

2

1 reference

1 August 2017

Heiko Neuweger

3

1 reference

1 August 2017

Petra Högy

5

1 reference

1 August 2017

Karsten Niehaus

6

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1 August 2017

27 August 2012

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1 August 2017

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1 August 2017

13

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1 August 2017

214

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Creative Commons Attribution 2.0 Generic

1 August 2017

start time

27 August 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2105-13-214

0 references

cites work

Time alignment algorithms based on selected mass traces for complex LC-MS data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546004

ChromA: signal-based retention time alignment for chromatography-mass spectrometry data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546004

The correspondence problem for metabonomics datasets

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546004

Retention time alignment algorithms for LC/MS data must consider non-linear shifts

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546004

An iterative block-shifting approach to retention time alignment that preserves the shape and area of gas chromatography-mass spectrometry peaks

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546004

Critical assessment of alignment procedures for LC-MS proteomics and metabolomics measurements

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546004

MeltDB: a software platform for the analysis and integration of metabolomics experiment data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546004

Optimized time alignment algorithm for LC-MS data: correlation optimized warping using component detection algorithm-selected mass chromatograms

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546004

Retention index thresholds for compound matching in GC-MS metabolite profiling

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546004

Time-series alignment by non-negative multiple generalized canonical correlation analysis.

6 July 2018

1 reference

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A dynamic programming approach for the alignment of signal peaks in multiple gas chromatography-mass spectrometry experiments

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546004

A geometric approach for the alignment of liquid chromatography-mass spectrometry data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546004

Systematic identification of conserved metabolites in GC/MS data for metabolomics and biomarker discovery

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546004

Unsupervised parameter optimization for automated retention time alignment of severely shifted gas chromatographic data using the piecewise alignment algorithm

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546004

Robust algorithm for alignment of liquid chromatography-mass spectrometry analyses in an accurate mass and time tag data analysis pipeline

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546004

Chromatographic alignment of ESI-LC-MS proteomics data sets by ordered bijective interpolated warping.

6 July 2018

1 reference

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Symmetric time warping, Boltzmann pair probabilities and functional genomics

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546004

XCMS: processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546004

Chromatographic alignment by warping and dynamic programming as a pre-processing tool for PARAFAC modelling of liquid chromatography-mass spectrometry data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546004

The use of gene clusters to infer functional coupling

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546004

A genomic perspective on protein families

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546004

Characterization of normal human cells by pyrolysis gas chromatography mass spectrometry

6 July 2018

1 reference

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Alignment using variable penalty dynamic time warping.

6 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2105-13-214

21 January 2018

Parametric time warping.

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2105-13-214

Effects of elevated CO2 on grain yield and quality of wheat: results from a 3-year free-air CO2 enrichment experiment

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546004

Signal maps for mass spectrometry-based comparative proteomics.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546004

Highly sensitive feature detection for high resolution LC/MS

27 October 2018

1 reference

5 May 2024

https://opencitations.net/index/api/v1/citations/10.1186/1471-2105-9-504

Identifiers

DOI

10.1186/1471-2105-13-214

1 reference

journals/bmcbi/HoffmannKNWHNS12

1 August 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

1 August 2017

1 reference