Outersphere and innersphere coordinated metal ions in an aminoacyl-tRNA synthetase ribozyme (Q34396370)

1 August 2017

title

Outersphere and innersphere coordinated metal ions in an aminoacyl-tRNA synthetase ribozyme (English)

1 reference

1 August 2017

0 references

Hirohide Saito

1

1 reference

1 August 2017

Hiroaki Suga

series ordinal

2

1 reference

1 August 2017

language of work or name

English

0 references

publication date

1 December 2002

1 reference

1 August 2017

published in

Nucleic Acids Research

1 reference

1 August 2017

volume

30

1 reference

1 August 2017

issue

23

1 reference

1 August 2017

page(s)

5151-5159

1 reference

The role of metal ions in RNA catalysis

1 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137956

Existence of efficient divalent metal ion-catalyzed and inefficient divalent metal ion-independent channels in reactions catalyzed by a hammerhead ribozyme

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137956

Metal ion binding and the folding of the hairpin ribozyme

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137956

Concurrent molecular recognition of the amino acid and tRNA by a ribozyme.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137956

Essential roles of innersphere metal ions for the formation of the glutamine binding site in a bifunctional ribozyme

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137956

The hammerhead cleavage reaction in monovalent cations

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137956

Comparison of the hammerhead cleavage reactions stimulated by monovalent and divalent cations.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137956

Recent advances in the elucidation of the mechanisms of action of ribozymes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137956

Crystal structure of a hairpin ribozyme-inhibitor complex with implications for catalysis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137956

An in vitro evolved precursor tRNA with aminoacylation activity

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137956

Use of terbium as a probe of tRNA tertiary structure and folding

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137956

Metal ions in ribozyme folding and catalysis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137956

The hammerhead, hairpin and VS ribozymes are catalytically proficient in monovalent cations alone

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137956

Unusual metal ion catalysis in an acyl-transferase ribozyme

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137956

Inhibition of the hammerhead ribozyme cleavage reaction by site-specific binding of Tb

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137956

Compilation of tRNA sequences and sequences of tRNA genes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137956

Metal ions play a passive role in the hairpin ribozyme catalysed reaction

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137956

Solution structure of a metal-binding site in the major groove of RNA complexed with cobalt (III) hexammine

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137956

Capturing the structure of a catalytic RNA intermediate: the hammerhead ribozyme

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137956

Metal-binding sites in the major groove of a large ribozyme domain

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137956

Role of divalent metal ions in the hammerhead RNA cleavage reaction

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137956

Mechanistic characterization of the HDV genomic ribozyme: assessing the catalytic and structural contributions of divalent metal ions within a multichannel reaction mechanism

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137956

Probing non-selective cation binding in the hairpin ribozyme with Tb(III).

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137956

The hairpin ribozyme: structure, assembly and catalysis

27 October 2018

1 reference

12 December 2020

A single metal ion plays structural and chemical roles in an aminoacyl-transferase ribozyme

1 reference

12 December 2020

Evidence for the role of solvated metal hydroxide in the hammerhead cleavage mechanism

1 reference

12 December 2020

A unique mechanism for RNA catalysis: the role of metal cofactors in hairpin ribozyme cleavage

1 reference

12 December 2020

An unusual pH-independent and metal-ion-independent mechanism for hairpin ribozyme catalysis

1 reference

12 December 2020

Probing the binding of Tb(III) and Eu(III) to the hammerhead ribozyme using luminescence spectroscopy

1 reference

12 December 2020

Cobalt hexammine inhibition of the hammerhead ribozyme

1 reference

12 December 2020

Metal ion binding sites in a group II intron core

1 reference

12 December 2020

Diverse roles of metal ions in acyl-transferase ribozymes

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKF641

1 reference

1 August 2017

1 reference

1 August 2017

1 reference