SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads. (Q34404689)

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8 March 2020

title

SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads (English)

1 reference

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8 March 2020

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15

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8 March 2020

Jun Wang

16

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8 March 2020

Ruibang Luo

4

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8 March 2020

Tak-Wah Lam

12

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8 March 2020

Xun Xu

14

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8 March 2020

Jun Wang

17

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8 March 2020

author name string

Yinlong Xie

1

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8 March 2020

Gengxiong Wu

2

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8 March 2020

Jingbo Tang

3

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8 March 2020

Jordan Patterson

5

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8 March 2020

Shanlin Liu

6

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8 March 2020

Weihua Huang

7

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8 March 2020

Guangzhu He

8

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8 March 2020

Shengchang Gu

9

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8 March 2020

Shengkang Li

10

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8 March 2020

Xin Zhou

11

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8 March 2020

Yingrui Li

13

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8 March 2020

language of work or name

English

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publication date

13 February 2014

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8 March 2020

number of pages

7

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based on heuristic

inferred from page(s)

published in

Bioinformatics

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8 March 2020

volume

30

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8 March 2020

issue

12

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8 March 2020

page(s)

1660-1666

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Full-length transcriptome assembly from RNA-Seq data without a reference genome

8 March 2020

cites work

1 reference

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Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

21 January 2018

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21 January 2018

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Comparative study of de novo assembly and genome-guided assembly strategies for transcriptome reconstruction based on RNA-Seq

21 January 2018

1 reference

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SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

21 January 2018

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Transcriptome sequencing to detect gene fusions in cancer

21 January 2018

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Rnnotator: an automated de novo transcriptome assembly pipeline from stranded RNA-Seq reads

21 January 2018

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Mapping and quantifying mammalian transcriptomes by RNA-Seq

21 January 2018

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De novo assembly and analysis of RNA-seq data.

21 January 2018

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Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

21 January 2018

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ABySS: a parallel assembler for short read sequence data

21 January 2018

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Optimization of de novo transcriptome assembly from next-generation sequencing data

21 January 2018

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

21 January 2018

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The Genomes of Oryza sativa: a history of duplications

21 January 2018

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Velvet: algorithms for de novo short read assembly using de Bruijn graphs

21 January 2018

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Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome

21 January 2018

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21 January 2018

Identifiers

DOI

1 reference

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journals/bioinformatics/XieWTLPLHHGLZLLXWW14

8 March 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24532719%20AND%20SRC:MED&resulttype=core&format=json