Phylogenetic and functional metagenomic profiling for assessing microbial biodiversity in environmental monitoring (Q34405406)

2 August 2017

title

Phylogenetic and functional metagenomic profiling for assessing microbial biodiversity in environmental monitoring (English)

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2 August 2017

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microbial biodiversity

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Veljo Kisand

1

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2 August 2017

Angelica Valente

2

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2 August 2017

Armin Lahm

3

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2 August 2017

Gerard Tanet

4

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2 August 2017

Teresa Lettieri

5

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2 August 2017

language of work or name

English

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publication date

27 August 2012

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2 August 2017

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2 August 2017

volume

7

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2 August 2017

issue

8

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2 August 2017

page(s)

e43630

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Creative Commons Attribution 4.0 International

2 August 2017

copyright license

start time

27 August 2012

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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6 July 2018

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6 July 2018

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Complete-fosmid and fosmid-end sequences reveal frequent horizontal gene transfers in marine uncultured planktonic archaea

6 July 2018

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6 July 2018

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Quality control and preprocessing of metagenomic datasets

6 July 2018

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6 July 2018

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Unexpected abundance of coenzyme F(420)-dependent enzymes in Mycobacterium tuberculosis and other actinobacteria

6 July 2018

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6 July 2018

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Artificial and natural duplicates in pyrosequencing reads of metagenomic data

6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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Polymerase chain reaction primers miss half of rRNA microbial diversity

6 July 2018

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6 July 2018

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Metagenomics reveals diversity and abundance of meta-cleavage pathways in microbial communities from soil highly contaminated with jet fuel under air-sparging bioremediation

6 July 2018

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Contaminants reduce the richness and evenness of marine communities: a review and meta-analysis

6 July 2018

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Quantifying environmental adaptation of metabolic pathways in metagenomics

6 July 2018

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Environmental rRNA inventories miss over half of protistan diversity

6 July 2018

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Unraveling the biochemistry and provenance of pupylation: a prokaryotic analog of ubiquitination

6 July 2018

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Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world

6 July 2018

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6 July 2018

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Quantifying the evidence for biodiversity effects on ecosystem functioning and services

6 July 2018

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6 July 2018

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Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

6 July 2018

1 reference

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6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3428334

PCR-induced sequence artifacts and bias: insights from comparison of two 16S rRNA clone libraries constructed from the same sample.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3428334

The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3428334

Rationale for a new generation of indicators for coastal waters

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3428334

Do U.S. Environmental Protection Agency water quality guidelines for recreational waters prevent gastrointestinal illness? A systematic review and meta-analysis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3428334

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6 July 2018

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

6 July 2018

1 reference

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6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3428334

Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3428334

Phylogenetic identification and in situ detection of individual microbial cells without cultivation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3428334

Protecting aquatic organisms from chemicals: the harsh realities.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3428334

Systematic artifacts in metagenomes from complex microbial communities.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3428334

Identification of ribosomal RNA genes in metagenomic fragments

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3428334

Heavy metals in surficial coastal sediments of the Ligurian Sea.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3428334

Temporal change in culturable phenanthrene degraders in response to long‐term exposure to phenanthrene in a soil column system

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3428334

Monitoring long-term ecological changes through the Ecological Monitoring and Assessment Network: science-based and policy relevant.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3428334

Gene annotation and pathway mapping in KEGG

27 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22952724

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0043630

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2 August 2017

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2 August 2017

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