The role of the Brr5/Ysh1 C-terminal domain and its homolog Syc1 in mRNA 3'-end processing in Saccharomyces cerevisiae (Q34411087)

2 August 2017

title

The role of the Brr5/Ysh1 C-terminal domain and its homolog Syc1 in mRNA 3'-end processing in Saccharomyces cerevisiae (English)

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2 August 2017

main subject

Saccharomyces cerevisiae

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6

Torben Heick Jensen

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2 August 2017

Alexander Zhelkovsky

1

1 reference

2 August 2017

Yoko Tacahashi

2

1 reference

2 August 2017

Tommy Nasser

3

1 reference

2 August 2017

Xiaoyuan He

4

1 reference

2 August 2017

Ulrike Sterzer

5

1 reference

2 August 2017

Horst Domdey

7

1 reference

2 August 2017

Claire Moore

8

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2 August 2017

language of work or name

English

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publication date

23 January 2006

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2 August 2017

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2 August 2017

volume

12

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2 August 2017

issue

3

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2 August 2017

page(s)

435-445

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Symplekin and multiple other polyadenylation factors participate in 3'-end maturation of histone mRNAs

2 August 2017

cites work

1 reference

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The yeast Snm1 protein is a DNA 5'-exonuclease

6 July 2018

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RNA polymerase II carboxy-terminal domain phosphorylation is required for cotranscriptional pre-mRNA splicing and 3'-end formation

6 July 2018

1 reference

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Functions for S. cerevisiae Swd2p in 3' end formation of specific mRNAs and snoRNAs and global histone 3 lysine 4 methylation

6 July 2018

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Evidence that polyadenylation factor CPSF-73 is the mRNA 3' processing endonuclease.

6 July 2018

1 reference

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The essential WD repeat protein Swd2 has dual functions in RNA polymerase II transcription termination and lysine 4 methylation of histone H3

6 July 2018

1 reference

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Phosphorylation of serine 2 within the RNA polymerase II C-terminal domain couples transcription and 3' end processing

6 July 2018

1 reference

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Ssu72 protein mediates both poly(A)-coupled and poly(A)-independent termination of RNA polymerase II transcription

6 July 2018

1 reference

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The role of the yeast cleavage and polyadenylation factor subunit Ydh1p/Cft2p in pre-mRNA 3'-end formation

6 July 2018

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Organization and function of APT, a subcomplex of the yeast cleavage and polyadenylation factor involved in the formation of mRNA and small nucleolar RNA 3'-ends

6 July 2018

1 reference

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Independent functions of yeast Pcf11p in pre-mRNA 3' end processing and in transcription termination

6 July 2018

1 reference

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Functional interactions between the transcription and mRNA 3′ end processing machineries mediated by Ssu72 and Sub1

6 July 2018

1 reference

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Functional dissection of the zinc finger and flanking domains of the Yth1 cleavage/polyadenylation factor

6 July 2018

1 reference

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A role for SSU72 in balancing RNA polymerase II transcription elongation and termination

6 July 2018

1 reference

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Metallo-beta-lactamase fold within nucleic acids processing enzymes: the beta-CASP family

6 July 2018

1 reference

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Yhh1p/Cft1p directly links poly(A) site recognition and RNA polymerase II transcription termination

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383582

Assigning a function to a conserved group of proteins: the tRNA 3'-processing enzymes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383582

T7 RNA polymerase-directed transcripts are processed in yeast and link 3' end formation to mRNA nuclear export

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383582

Hairpin opening and overhang processing by an Artemis/DNA-dependent protein kinase complex in nonhomologous end joining and V(D)J recombination

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383582

Requirements of the RNA polymerase II C-terminal domain for reconstituting pre-mRNA 3' cleavage.

6 July 2018

1 reference

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Functional organization of the yeast proteome by systematic analysis of protein complexes

6 July 2018

1 reference

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Rna15 interaction with the A-rich yeast polyadenylation signal is an essential step in mRNA 3'-end formation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383582

Expansion of the zinc metallo-hydrolase family of the beta-lactamase fold

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383582

An evolutionary classification of the metallo-beta-lactamase fold proteins.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383582

Capping, splicing, and 3' processing are independently stimulated by RNA polymerase II: different functions for different segments of the CTD

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383582

Recognition of polyadenylation sites in yeast pre-mRNAs by cleavage and polyadenylation factor

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383582

Fip1 regulates the activity of Poly(A) polymerase through multiple interactions

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383582

Distinct roles of two Yth1p domains in 3'-end cleavage and polyadenylation of yeast pre-mRNAs

6 July 2018

1 reference

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Complex protein interactions within the human polyadenylation machinery identify a novel component

6 July 2018

1 reference

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The WD-repeat protein pfs2p bridges two essential factors within the yeast pre-mRNA 3'-end-processing complex

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383582

Pta1, a component of yeast CF II, is required for both cleavage and poly(A) addition of mRNA precursor

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383582

Formation of mRNA 3' ends in eukaryotes: mechanism, regulation, and interrelationships with other steps in mRNA synthesis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383582

RNA polymerase II is an essential mRNA polyadenylation factor

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383582

Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383582

Activated transcription independent of the RNA polymerase II holoenzyme in budding yeast

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383582

Hrp1, a sequence-specific RNA-binding protein that shuttles between the nucleus and the cytoplasm, is required for mRNA 3'-end formation in yeast

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383582

A multisubunit 3' end processing factor from yeast containing poly(A) polymerase and homologues of the subunits of mammalian cleavage and polyadenylation specificity factor

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383582

Cleavage factor II of Saccharomyces cerevisiae contains homologues to subunits of the mammalian Cleavage/ polyadenylation specificity factor and exhibits sequence-specific, ATP-dependent interaction with precursor RNA.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383582

The C-terminal domain of RNA polymerase II couples mRNA processing to transcription

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383582

Genomic libraries and a host strain designed for highly efficient two-hybrid selection in yeast

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383582

Evidence that Spt3 functionally interacts with Mot1, TFIIA, and TATA-binding protein to confer promoter-specific transcriptional control in Saccharomyces cerevisiae

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383582

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383582

Essential yeast protein with unexpected similarity to subunits of mammalian cleavage and polyadenylation specificity factor (CPSF).

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383582

Identification of novel genes required for yeast pre-mRNA splicing by means of cold-sensitive mutations

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383582

A new efficient gene disruption cassette for repeated use in budding yeast

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383582

Construction of a set of convenient Saccharomyces cerevisiae strains that are isogenic to S288C

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383582

The FIP1 gene encodes a component of a yeast pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383582

The P-loop--a common motif in ATP- and GTP-binding proteins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383582

Conditional defect in mRNA 3' end processing caused by a mutation in the gene for poly(A) polymerase

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383582

Separation of factors required for cleavage and polyadenylation of yeast pre-mRNA

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383582

Regulation of yeast mRNA 3' end processing by phosphorylation.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383582

Functional interaction of yeast pre-mRNA 3' end processing factors with RNA polymerase II.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383582

Coupling termination of transcription to messenger RNA maturation in yeast.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383582

Heat-inducible degron: a method for constructing temperature-sensitive mutants.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383582

RNA processing generates the mature 3' end of yeast CYC1 messenger RNA in vitro

27 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16431986

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The polyadenylation factor CPSF-73 is involved in histone-pre-mRNA processing

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16431986

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1261/RNA.2267606

1 reference

2 August 2017

1 reference

2 August 2017

1 reference