Identification of active denitrifiers in rice paddy soil by DNA- and RNA-based analyses. (Q34413418)

2 August 2017

title

Identification of active denitrifiers in rice paddy soil by DNA- and RNA-based analyses. (English)

1 reference

2 August 2017

4

Shigeto Otsuka

1 reference

2 August 2017

2

Satoshi Ishii

1 reference

2 August 2017

Megumi Yoshida

1

1 reference

2 August 2017

Daichi Fujii

series ordinal

3

1 reference

2 August 2017

Keishi Senoo

series ordinal

5

1 reference

2 August 2017

publication date

5 September 2012

1 reference

Microbes and environments / JSME

2 August 2017

published in

1 reference

2 August 2017

volume

27

1 reference

2 August 2017

issue

4

1 reference

2 August 2017

page(s)

456-461

1 reference

Nitrogen cycling in rice paddy environments: past achievements and future challenges.

2 August 2017

cites work

1 reference

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6 July 2018

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6 July 2018

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nirK-harboring denitrifiers are more responsive to denitrification- inducing conditions in rice paddy soil than nirS-harboring bacteria.

6 July 2018

1 reference

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6 July 2018

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Identification of novel betaproteobacteria in a succinate-assimilating population in denitrifying rice paddy soil by using stable isotope probing.

6 July 2018

1 reference

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Phylogenetic and functional diversity of denitrifying bacteria isolated from various rice paddy and rice-soybean rotation fields.

6 July 2018

1 reference

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Isolation of oligotrophic denitrifiers carrying previously uncharacterized functional gene sequences.

6 July 2018

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6 July 2018

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Changes in denitrifier abundance, denitrification gene mRNA levels, nitrous oxide emissions, and denitrification in anoxic soil microcosms amended with glucose and plant residues

6 July 2018

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6 July 2018

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Microbial populations responsive to denitrification-inducing conditions in rice paddy soil, as revealed by comparative 16S rRNA gene analysis.

6 July 2018

1 reference

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Observation of high seasonal variation in community structure of denitrifying bacteria in arable soil receiving artificial fertilizer and cattle manure by determining T-RFLP of nir gene fragments

6 July 2018

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Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils

6 July 2018

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Impact of plant functional group, plant species, and sampling time on the composition of nirK-type denitrifier communities in soil

6 July 2018

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Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

6 July 2018

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Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments

6 July 2018

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Assessment of soil microbial community structure by use of taxon-specific quantitative PCR assays

6 July 2018

1 reference

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Diversity of transcripts of nitrite reductase genes (nirK and nirS) in rhizospheres of grain legumes

6 July 2018

1 reference

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Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness

6 July 2018

1 reference

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Community structure and metabolism through reconstruction of microbial genomes from the environment

6 July 2018

1 reference

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Community composition and functioning of denitrifying bacteria from adjacent meadow and forest soils

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4103554

Denitrifying genes in bacterial and Archaeal genomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4103554

Detection and diversity of expressed denitrification genes in estuarine sediments after reverse transcription-PCR amplification from mRNA

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4103554

Diversity of nitrite reductase (nirK and nirS) gene fragments in forested upland and wetland soils

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4103554

Molecular analysis of ammonia oxidation and denitrification in natural environments

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4103554

Microbiology of flooded rice paddies

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4103554

Kinetics of nirS expression (cytochrome cd1 nitrite reductase) in Pseudomonas stutzeri during the transition from aerobic respiration to denitrification: evidence for a denitrification-specific nitrate- and nitrite-responsive regulatory system.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4103554

Cell biology and molecular basis of denitrification

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4103554

Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4103554

Numerically dominant denitrifying bacteria from world soils

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4103554

A survey of the cellular responses in Pseudomonas putida KT2440 growing in sterilized soil by microarray analysis

6 July 2018

1 reference

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Visualization and direct counting of individual denitrifying bacterial cells in soil by nirK-targeted direct in situ PCR.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4103554

Bacterial gene abundances as indicators of greenhouse gas emission in soils.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4103554

Reassessing PCR primers targeting nirS, nirK and nosZ genes for community surveys of denitrifying bacteria with DGGE.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4103554

Abundance of narG, nirS, nirK, and nosZ genes of denitrifying bacteria during primary successions of a glacier foreland

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4103554

Quantitative detection of the nosZ gene, encoding nitrous oxide reductase, and comparison of the abundances of 16S rRNA, narG, nirK, and nosZ genes in soils.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4103554

Denitrification activity and relevant bacteria revealed by nitrite reductase gene fragments in soil of temperate mixed forest

27 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22972387

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Denitrification by fungi

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22972387

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Isolation of functional single cells from environments using a micromanipulator: application to study denitrifying bacteria

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22972387

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1264/JSME2.ME12076

1 reference

2 August 2017

1 reference

2 August 2017

1 reference