Global identification of peptidase specificity by multiplex substrate profiling (Q34424750)

2 August 2017

title

Global identification of peptidase specificity by multiplex substrate profiling (English)

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2 August 2017

3

Giselle M Knudsen

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James H McKerrow

13

object named as

James H McKerrow

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2 August 2017

Alexander L. Greninger

7

object named as

Alexander L Greninger

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2 August 2017

Anthony J O'Donoghue

1

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2 August 2017

A Alegra Eroy-Reveles

2

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2 August 2017

Jessica Ingram

4

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2 August 2017

Min Zhou

5

1 reference

2 August 2017

Jacob B Statnekov

6

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2 August 2017

Daniel R Hostetter

8

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2 August 2017

Gang Qu

9

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2 August 2017

David A Maltby

10

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2 August 2017

Marc O Anderson

11

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2 August 2017

Joseph L Derisi

12

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2 August 2017

Alma L Burlingame

14

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2 August 2017

Charles S Craik

15

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2 August 2017

publication date

30 September 2012

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2 August 2017

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2 August 2017

volume

9

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2 August 2017

issue

11

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2 August 2017

page(s)

1095-1100

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Characterization of gut-associated cathepsin D hemoglobinase from tick Ixodes ricinus (IrCD1).

2 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707110

Investigation of the proteolytic functions of an expanded cercarial elastase gene family in Schistosoma mansoni

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707110

MEROPS: the database of proteolytic enzymes, their substrates and inhibitors

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707110

Detection of pancreatic cancer tumours and precursor lesions by cathepsin E activity in mouse models.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707110

Highly selective hydrolysis of kinins by recombinant prolylcarboxypeptidase

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707110

Prediction of protease substrates using sequence and structure features

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707110

Proteomic techniques and activity-based probes for the system-wide study of proteolysis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707110

Multiplex N-terminome analysis of MMP-2 and MMP-9 substrate degradomes by iTRAQ-TAILS quantitative proteomics

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707110

MS-driven protease substrate degradomics

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707110

GLI1 is regulated through Smoothened-independent mechanisms in neoplastic pancreatic ducts and mediates PDAC cell survival and transformation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707110

Global sequencing of proteolytic cleavage sites in apoptosis by specific labeling of protein N termini

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707110

Inhibition of a secreted glutamic peptidase prevents growth of the fungus Talaromyces emersonii

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707110

In-depth analysis of tandem mass spectrometry data from disparate instrument types

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707110

Significance analysis of spectral count data in label-free shotgun proteomics

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707110

Disentanglement of protease substrate repertoires

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707110

Recombinant cathepsin E has no proteolytic activity at neutral pH.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707110

Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707110

Protease specificity determination by using cellular libraries of peptide substrates (CLiPS).

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707110

Substrate profiling of cysteine proteases using a combinatorial peptide library identifies functionally unique specificities

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707110

Identification of novel proteases and immunomodulators in the secretions of schistosome cercariae that facilitate host entry.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707110

A genomic view of the complexity of mammalian proteolytic systems.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707110

A model for random sampling and estimation of relative protein abundance in shotgun proteomics

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707110

Characterization of structural determinants of granzyme B reveals potent mediators of extended substrate specificity

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707110

Cercarial elastase is encoded by a functionally conserved gene family across multiple species of schistosomes.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707110

Determination of protease cleavage site motifs using mixture-based oriented peptide libraries

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707110

Rapid and general profiling of protease specificity by using combinatorial fluorogenic substrate libraries

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707110

Definition and redesign of the extended substrate specificity of granzyme B.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707110

Substrate phage: selection of protease substrates by monovalent phage display

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707110

Elastinolytic activity of human cathepsin L.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707110

Arresting tissue invasion of a parasite by protease inhibitors chosen with the aid of computer modeling

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707110

Improved recovery of proteome-informative, protein N-terminal peptides by combined fractional diagonal chromatography (COFRADIC).

6 July 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2182

A quantitative proteomics design for systematic identification of protease cleavage events.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2182

Importance of the P4' residue in human granzyme B inhibitors and substrates revealed by scanning mutagenesis of the proteinase inhibitor 9 reactive center loop

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2182

Proteomic analysis of Schistosoma mansoni cercarial secretions

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2182

Design and Synthesis of Prolylcarboxypeptidase (PrCP) Inhibitors To Validate PrCP As A Potential Target for Obesity

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2182

The complete genome of klassevirus - a novel picornavirus in pediatric stool

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707110

The role of dipeptidyl peptidase IV in the cleavage of glucagon family peptides: in vivo metabolism of pituitary adenylate cyclase activating polypeptide-(1-38).

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707110

Improved visualization of protein consensus sequences by iceLogo

27 October 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2182

Substrate requirements of human rhinovirus 3C protease for peptide cleavage in vitro

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23023596

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Murine and human cathepsin B exhibit similar properties: possible implications for drug discovery

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23023596

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NMETH.2182

1 reference

Dimensions Publication ID

2 August 2017

0 references

1 reference

2 August 2017

1 reference