Structure Motivator: a tool for exploring small three-dimensional elements in proteins (Q34446011)

2 August 2017

title

Structure Motivator: a tool for exploring small three-dimensional elements in proteins (English)

1 reference

2 August 2017

David P Leader

1

1 reference

2 August 2017

E James Milner-White

series ordinal

2

1 reference

2 August 2017

publication date

16 October 2012

1 reference

2 August 2017

published in

BMC Structural Biology

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2 August 2017

volume

12

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2 August 2017

page(s)

26

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describes a project that uses

2 August 2017

SQL

1 reference

26 June 2022

https://europepmc.org/article/PMC/PMC3507813

based on heuristic

inferred from PubMed Central ID database lookup

cites work

The Pfam protein families database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507813

Biomolecules in the computer: Jmol to the rescue

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507813

Motivated proteins: a web application for studying small three-dimensional protein motifs

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507813

MSDmotif: exploring protein sites and motifs

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507813

3(10)-helices in proteins are parahelices

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507813

The Ramachandran plots of glycine and pre-proline

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507813

The flexibility in the proline ring couples to the protein backbone

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507813

Revisiting the Ramachandran plot: Hard‐sphere repulsion, electrostatics, and H‐bonding in the α‐helix

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507813

Stereochemistry of polypeptide chain configurations

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507813

Structure validation by Calpha geometry: phi,psi and Cbeta deviation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507813

PROSITE: a documented database using patterns and profiles as motif descriptors

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507813

Conformations of amino acids in proteins.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507813

The conformations of polypeptide chains where the main-chain parts of successive residues are enantiomeric. Their occurrence in cation and anion-binding regions of proteins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507813

Peptide-plane flipping in proteins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507813

Conformational attractors on the Ramachandran map.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507813

Asparagine and glutamine: using hydrogen atom contacts in the choice of side-chain amide orientation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507813

SCOP: a Structural Classification of Proteins database.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507813

CATH--a hierarchic classification of protein domain structures

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507813

Phi/psi-chology: Ramachandran revisited

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507813

The structure of a phytocyanin, the basic blue protein from cucumber, refined at 1.8 A resolution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507813

Experimentally observed conformation-dependent geometry and hidden strain in proteins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507813

Mapping the protein universe

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507813

Stereochemical criteria for polypeptides and proteins. V. Conformation of a system of three linked peptide units

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507813

Situations of gamma-turns in proteins. Their relation to alpha-helices, beta-sheets and ligand binding sites

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507813

Intrinsic phi, psi propensities of amino acids, derived from the coil regions of known structures

6 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1472-6807-12-26

Local propensities and statistical potentials of backbone dihedral angles in proteins

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23067391

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The structure of the ends of α-helices in globular proteins: effect of additional hydrogen bonds and implications for helix formation

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23067391

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1472-6807-12-26

1 reference

Dimensions Publication ID

2 August 2017

0 references

1 reference

2 August 2017

1 reference