Proteogenomic analysis of polymorphisms and gene annotation divergences in prokaryotes using a clustered mass spectrometry-friendly database (Q34454913)

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English	Proteogenomic analysis of polymorphisms and gene annotation divergences in prokaryotes using a clustered mass spectrometry-friendly database	scientific article

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scholarly article

1 reference

Europe PubMed Central

2 August 2017

Proteogenomic analysis of polymorphisms and gene annotation divergences in prokaryotes using a clustered mass spectrometry-friendly database (English)

1 reference

Europe PubMed Central

2 August 2017

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Dick van Soolingen

7

object named as

Dick van Soolingen

1 reference

Europe PubMed Central

2 August 2017

Anita C. Schürch

object named as

Anita C Schürch

4

0 references

Gustavo Antônio de Souza

object named as

Gustavo A de Souza

1

0 references

Robin M. Warren

object named as

Robin M Warren

9

0 references

Magnus Ø. Arntzen

2

object named as

Magnus Ø Arntzen

1 reference

Europe PubMed Central

2 August 2017

8

object named as

Bernd Thiede

1 reference

Europe PubMed Central

2 August 2017

author name string

Suereta Fortuin

3

1 reference

Europe PubMed Central

2 August 2017

Hiwa Målen

5

1 reference

Europe PubMed Central

2 August 2017

Christopher R E McEvoy

6

1 reference

Europe PubMed Central

2 August 2017

Harald G Wiker

10

1 reference

Europe PubMed Central

2 August 2017

publication date

28 October 2010

1 reference

Europe PubMed Central

2 August 2017

Molecular & Cellular Proteomics

1 reference

Europe PubMed Central

2 August 2017

10

1 reference

Europe PubMed Central

2 August 2017

1

1 reference

Europe PubMed Central

2 August 2017

M110.002527

1 reference

Europe PubMed Central

2 August 2017

Definition of novel cell envelope associated proteins in Triton X-114 extracts of Mycobacterium tuberculosis H37Rv

1 reference

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1 reference

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MSMSpdbb: providing protein databases of closely related organisms to improve proteomic characterization of prokaryotic microbes

1 reference

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1 reference

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MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

1 reference

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The impact of next-generation sequencing technology on genetics

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Genome annotation past, present, and future: how to define an ORF at each locus

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The International Protein Index: an integrated database for proteomics experiments

1 reference

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Stop and go extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics

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1 reference

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Operons in Escherichia coli: genomic analyses and predictions

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Negligible genetic diversity of mycobacterium tuberculosis host immune system protein targets: evidence of limited selective pressure

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1 reference

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1 reference

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based on heuristic

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1 reference

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12 December 2020

based on heuristic

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Identifiers

10.1074/MCP.M110.002527

1 reference

Europe PubMed Central

2 August 2017

1 reference

Europe PubMed Central

2 August 2017

1 reference

Europe PubMed Central

2 August 2017

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