Accurate simulation and detection of coevolution signals in multiple sequence alignments (Q34455146)

2 August 2017

title

Accurate simulation and detection of coevolution signals in multiple sequence alignments (English)

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2 August 2017

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Elisabeth R. M. Tillier

object named as

Elisabeth R Tillier

series ordinal

2

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author name string

Sharon H Ackerman

series ordinal

1

1 reference

2 August 2017

Domenico L Gatti

series ordinal

3

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2 August 2017

language of work or name

English

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publication date

16 October 2012

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2 August 2017

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2 August 2017

volume

7

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2 August 2017

issue

10

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2 August 2017

page(s)

e47108

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Creative Commons Attribution 4.0 International

2 August 2017

copyright license

start time

16 October 2012

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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Direct-coupling analysis of residue coevolution captures native contacts across many protein families

6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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Identification of coevolving residues and coevolution potentials emphasizing structure, bond formation and catalytic coordination in protein evolution

6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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Separation of phylogenetic and functional associations in biological sequences by using the parametric bootstrap

6 July 2018

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Correlations among amino acid sites in bHLH protein domains: an information theoretic analysis

6 July 2018

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Effective use of sequence correlation and conservation in fold recognition

6 July 2018

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Evolutionarily conserved pathways of energetic connectivity in protein families

6 July 2018

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6 July 2018

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The mobile flavin of 4-OH benzoate hydroxylase

6 July 2018

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Structure and mechanism of the iron‐sulfur flavoprotein phthalate dioxygenase reductase

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473043

Mutual information is critically dependent on prior assumptions: would the correct estimate of mutual information please identify itself?

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473043

Functionally compensating coevolving positions are neither homoplasic nor conserved in clades

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473043

Mutual information without the influence of phylogeny or entropy dramatically improves residue contact prediction

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473043

Using information theory to search for co-evolving residues in proteins

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473043

Mutual information in protein multiple sequence alignments reveals two classes of coevolving positions.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473043

Influence of conservation on calculations of amino acid covariance in multiple sequence alignments

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473043

Minimax mutual information approach for independent component analysis.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473043

Using multiple interdependency to separate functional from phylogenetic correlations in protein alignments

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473043

10.1371/JOURNAL.PONE.0047108

27 October 2018

Identifiers

DOI

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2 August 2017

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2 August 2017

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