GapFiller: a de novo assembly approach to fill the gap within paired reads (Q34457179)

2 August 2017

GapFiller: a de novo assembly approach to fill the gap within paired reads (English)

1 reference

2 August 2017

2

Francesco Vezzi

1 reference

2 August 2017

Francesca Nadalin

1

1 reference

PubMed ID

23095524

2 August 2017

Alberto Policriti

series ordinal

3

1 reference

2 August 2017

7 September 2012

1 reference

2 August 2017

1 reference

2 August 2017

13 Suppl 14

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2 August 2017

S8

1 reference

Creative Commons Attribution 2.0 Generic

2 August 2017

start time

1 September 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2105-13-s14-s8

0 references

cites work

Feature-by-feature--evaluating de novo sequence assembly

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439727

GAGE: A critical evaluation of genome assemblies and assembly algorithms

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439727

Assemblathon 1: a competitive assessment of de novo short read assembly methods

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439727

FLASH: fast length adjustment of short reads to improve genome assemblies

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439727

Error correction of high-throughput sequencing datasets with non-uniform coverage

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439727

Comparing de novo genome assembly: the long and short of it

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439727

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439727

High-quality draft assemblies of mammalian genomes from massively parallel sequence data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439727

Quake: quality-aware detection and correction of sequencing errors

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439727

Limitations of next-generation genome sequence assembly

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439727

De novo assembly of short sequence reads

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439727

Unlocking short read sequencing for metagenomics

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439727

Assembly algorithms for next-generation sequencing data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439727

De novo assembly of human genomes with massively parallel short read sequencing

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439727

The sequence and de novo assembly of the giant panda genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439727

Parametric complexity of sequence assembly: theory and applications to next generation sequencing

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439727

QSRA: a quality-value guided de novo short read assembler

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439727

SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439727

Identification of common molecular subsequences

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439727

Assembling millions of short DNA sequences using SSAKE.

6 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2105-13-S14-S8

rNA: a fast and accurate short reads numerical aligner.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439727

A fast hybrid short read fragment assembly algorithm.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439727

Assembling genomic DNA sequences with PHRAP.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439727

10.1186/1471-2105-13-S14-S8

27 October 2018

Identifiers

DOI

1 reference

journals/bmcbi/NadalinVP12

2 August 2017

1 reference

DBLP Dataset 2021-01-02

release_kpbla6bq2fgyxgmidzshiuwt4q

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/kpbla6bq2fgyxgmidzshiuwt4q

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMCID

3439727

1 reference

2 August 2017

1 reference

PubMed ID

23095524