Integrated genome and transcriptome sequencing of the same cell (Q34458660)

2 August 2017

Integrated genome and transcriptome sequencing of the same cell (English)

1 reference

single cell transcriptomics

2 August 2017

0 references

1 reference

A curated database reveals trends in single-cell transcriptomics

https://www.nxn.se/single-cell-studies/data.tsv

Alexander van Oudenaarden

7 February 2021

author

5

Alexander van Oudenaarden

0 references

Magda Bienko

4

Magda Bienko

0 references

Lennart Kester

Lennart Kester

2

0 references

Siddharth S Dey

Siddharth S Dey

1

0 references

Bastiaan Spanjaard

Bastiaan Spanjaard

3

0 references

publication date

19 January 2015

1 reference

PubMed ID

25599178

external data available at URL

2 August 2017

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE62952

1 reference

A curated database reveals trends in single-cell transcriptomics

https://www.nxn.se/single-cell-studies/data.tsv

7 February 2021

1 reference

2 August 2017

33

1 reference

2 August 2017

3

1 reference

2 August 2017

285-289

1 reference

PubMed ID

25599178

describes a project that uses

2 August 2017

cell culture

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

https://www.nxn.se/single-cell-studies/data.tsv

exact match

https://scigraph.springernature.com/pub.10.1038/nbt.3129

0 references

cites work

Validation of noise models for single-cell transcriptomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4374170

Every cell is special: genome-wide studies add a new dimension to single-cell biology

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4374170

Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4374170

Single-cell RNA-seq reveals dynamic, random monoallelic gene expression in mammalian cells

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4374170

Quantitative single-cell RNA-seq with unique molecular identifiers

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4374170

Mosaic copy number variation in human neurons

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4374170

Quantitative assessment of single-cell RNA-sequencing methods.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4374170

Smart-seq2 for sensitive full-length transcriptome profiling in single cells.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4374170

Single-cell sequencing-based technologies will revolutionize whole-organism science

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4374170

Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4374170

Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4374170

A single cell level based method for copy number variation analysis by low coverage massively parallel sequencing

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4374170

A versatile genome-scale PCR-based pipeline for high-definition DNA FISH.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4374170

Genome-wide detection of single-nucleotide and copy-number variations of a single human cell

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4374170

Single-neuron sequencing analysis of L1 retrotransposition and somatic mutation in the human brain

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4374170

DNA template strand sequencing of single-cells maps genomic rearrangements at high resolution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4374170

CEL-Seq: single-cell RNA-Seq by multiplexed linear amplification

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4374170

Transcriptional consequences of aneuploidy

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4374170

Mouse genomic variation and its effect on phenotypes and gene regulation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4374170

Tumour evolution inferred by single-cell sequencing

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4374170

Origins and functional impact of copy number variation in the human genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4374170

mRNA-Seq whole-transcriptome analysis of a single cell

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4374170

Nature, nurture, or chance: stochastic gene expression and its consequences

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4374170

Relative impact of nucleotide and copy number variation on gene expression phenotypes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4374170

A faster circular binary segmentation algorithm for the analysis of array CGH data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4374170

Genome analyses of single human oocytes.

6 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNBT.3129

The External RNA Controls Consortium: a progress report.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNBT.3129

21 January 2018

Identifiers

DOI

10.1038/NBT.3129

1 reference

2 August 2017

1 reference

2 August 2017

1 reference

PubMed ID

25599178