Enhancer-like activity of a brome mosaic virus RNA promoter (Q34468969)

2 August 2017

title

Enhancer-like activity of a brome mosaic virus RNA promoter (English)

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2 August 2017

brome mosaic virus

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C T Ranjith-Kumar

1

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2 August 2017

Xin Zhang

series ordinal

2

1 reference

2 August 2017

C Cheng Kao

series ordinal

3

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2 August 2017

language of work or name

English

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publication date

1 February 2003

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2 August 2017

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2 August 2017

volume

77

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2 August 2017

issue

3

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2 August 2017

page(s)

1830-1839

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Lessons learned from the core RNA promoters of Brome mosaic virus and Cucumber mosaic virus

2 August 2017

cites work

1 reference

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Views of transcription initiation

6 July 2018

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Structural Analysis of the Hepatitis C Virus RNA Polymerase in Complex with Ribonucleotides

6 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140991

A mutant viral RNA promoter with an altered conformation retains efficient recognition by a viral RNA replicase through a solution-exposed adenine

6 July 2018

1 reference

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Crystal structures of active and inactive conformations of a caliciviral RNA-dependent RNA polymerase

6 July 2018

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RNA polymerase clamps down

6 July 2018

1 reference

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Transcriptional regulation at a distance in bacteria

6 July 2018

1 reference

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Structural and thermodynamic studies on mutant RNA motifs that impair the specificity between a viral replicase and its promoter

6 July 2018

1 reference

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A mechanism for initiating RNA-dependent RNA polymerization

6 July 2018

1 reference

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The specificity loop of T7 RNA polymerase interacts first with the promoter and then with the elongating transcript, suggesting a mechanism for promoter clearance

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140991

Template requirements for RNA synthesis by a recombinant hepatitis C virus RNA-dependent RNA polymerase

6 July 2018

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Synthesis of subgenomic RNAs by positive-strand RNA viruses

6 July 2018

1 reference

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A conserved hairpin structure in Alfamovirus and Bromovirus subgenomic promoters is required for efficient RNA synthesis in vitro.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140991

RNA motifs that determine specificity between a viral replicase and its promoter

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140991

Insights into transcription: structure and function of single-subunit DNA-dependent RNA polymerases

6 July 2018

1 reference

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Crystal structure of the RNA-dependent RNA polymerase of hepatitis C virus

6 July 2018

1 reference

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Crystal structure of the RNA-dependent RNA polymerase from hepatitis C virus reveals a fully encircled active site

6 July 2018

1 reference

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A simple and efficient method to reduce nontemplated nucleotide addition at the 3 terminus of RNAs transcribed by T7 RNA polymerase

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140991

Use of DNA, RNA, and chimeric templates by a viral RNA-dependent RNA polymerase: evolutionary implications for the transition from the RNA to the DNA world.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140991

Structural basis for initiation of transcription from an RNA polymerase-promoter complex

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140991

Spatial perturbations within an RNA promoter specifically recognized by a viral RNA-dependent RNA polymerase (RdRp) reveal that RdRp can adjust its promoter binding sites.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140991

Moieties in an RNA promoter specifically recognized by a viral RNA-dependent RNA polymerase

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140991

Transcription of RNA templates by T7 RNA polymerase.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140991

NMR structure of a classical pseudoknot: interplay of single- and double-stranded RNA

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140991

Reversing time: origin of telomerase

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140991

Sequence-specific recognition of a subgenomic RNA promoter by a viral RNA polymerase

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140991

Initiation of minus-strand RNA synthesis by the brome mosaicvirus RNA-dependent RNA polymerase: use of oligoribonucleotide primers.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140991

Tests of a model for promoter recognition by T7 RNA polymerase: thymine methyl group contacts

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140991

Recombination and polymerase error facilitate restoration of infectivity in brome mosaic virus.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140991

The RNAs of hepatitis delta virus are copied by RNA polymerase II in nuclear homogenates.

6 July 2018

1 reference

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Polymerase structures and function: variations on a theme?

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140991

Mechanism and control of transcription initiation in prokaryotes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140991

Mutational analysis of the tRNA mimicry of brome mosaic virus RNA. Sequence and structural requirements for aminoacylation and 3'-adenylation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140991

Mutational analysis of the sequence and structural requirements in brome mosaic virus RNA for minus strand promoter activity

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140991

Structure of RNAs replicated by the DNA-dependent T7 RNA polymerase

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140991

Brome mosaic virus, good for an RNA virologist's basic needs

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140991

The Brome mosaic virus subgenomic promoter hairpin is structurally similar to the iron-responsive element and functionally equivalent to the minus-strand core promoter stem-loop C.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140991

A novel mechanism to ensure terminal initiation by hepatitis C virus NS5B polymerase

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140991

Specific tyrosylation of the bulky tRNA-like structure of brome mosaic virus RNA relies solely on identity nucleotides present in its amino acid-accepting domain

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140991

RNA elements required for RNA recombination function as replication enhancers in vitro and in vivo in a plus-strand RNA virus

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140991

A minimal RNA promoter for minus-strand RNA synthesis by the brome mosaic virus polymerase complex

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140991

Going the distance: a current view of enhancer action

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140991

Mechanistic analysis of RNA synthesis by RNA-dependent RNA polymerase from two promoters reveals similarities to DNA-dependent RNA polymerase.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140991

Solution structure of the 3'-end of brome mosaic virus genomic RNAs. Conformational mimicry with canonical tRNAs

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140991

Replication of RNA by the DNA-dependent RNA polymerase of phage T7

27 October 2018

1 reference

12 December 2020

Completion of RNA synthesis by viral RNA replicases

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12 December 2020

DNA-dependent RNA polymerase II of plant origin transcribes viroid RNA into full-length copies

1 reference

12 December 2020

Initiation of (-)-strand RNA synthesis catalyzed by the BMV RNA-dependent RNA polymerase: synthesis of oligonucleotides

1 reference

12 December 2020

10.1128/JVI.77.3.1830-1839.2003

Identifiers

DOI

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2 August 2017

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2 August 2017

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