PRIMUS: rapid reconstruction of pedigrees from genome-wide estimates of identity by descent. (Q34478008)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25439724%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

title

PRIMUS: rapid reconstruction of pedigrees from genome-wide estimates of identity by descent (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25439724%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

author

Jennifer Elizabeth Below

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25439724%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

Jennifer Elizabeth Below

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25439724%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

6

Deborah A Nickerson

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25439724%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

author name string

Jeffrey Staples

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25439724%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

Dandi Qiao

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25439724%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

Michael H Cho

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25439724%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

Edwin K Silverman

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25439724%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

language of work or name

English

0 references

publication date

30 October 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25439724%20AND%20SRC:MED&resulttype=core&format=json

American Journal of Human Genetics

23 February 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25439724%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

volume

95

1 reference

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23 February 2020

issue

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25439724%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

page(s)

553-564

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25439724%20AND%20SRC:MED&resulttype=core&format=json

Challenges of linkage analysis in the era of whole-genome sequencing

23 February 2020

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1 reference

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6 July 2018

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6 July 2018

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6 July 2018

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Whole-exome sequencing identifies rare and low-frequency coding variants associated with LDL cholesterol

6 July 2018

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Meta-analysis of loci associated with age at natural menopause in African-American women

6 July 2018

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6 July 2018

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ALDH2 is associated to alcohol dependence and is the major genetic determinant of "daily maximum drinks" in a GWAS study of an isolated rural Chinese sample

6 July 2018

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6 July 2018

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QTL mapping of leukocyte telomere length in American Indians: the Strong Heart Family Study

6 July 2018

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Genome-wide linkage analysis of cardiovascular disease biomarkers in a large, multigenerational family

6 July 2018

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Genome-wide linkage analysis of carotid artery lumen diameter: the strong heart family study

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225580

Characterization and correction of error in genome-wide IBD estimation for samples with population structure

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225580

Pedigree and genotyping quality analyses of over 10,000 DNA samples from the Generation Scotland: Scottish Family Health Study

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225580

Whole-genome analysis reveals that mutations in inositol polyphosphate phosphatase-like 1 cause opsismodysplasia

6 July 2018

1 reference

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Mutations in ECEL1 cause distal arthrogryposis type 5D

6 July 2018

1 reference

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Analysis of 6,515 exomes reveals the recent origin of most human protein-coding variants

6 July 2018

1 reference

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Utilizing graph theory to select the largest set of unrelated individuals for genetic analysis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225580

Estimating kinship in admixed populations

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225580

Reconstruction of genealogical relationships with applications to Phase III of HapMap

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225580

The variant call format and VCFtools

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225580

Genome-wide association and meta-analysis in populations from Starr County, Texas, and Mexico City identify type 2 diabetes susceptibility loci and enrichment for expression quantitative trait loci in top signals

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225580

Family-based designs for genome-wide association studies

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225580

Linkage analysis without defined pedigrees

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225580

Maximum-likelihood estimation of recent shared ancestry (ERSA).

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225580

A fast, powerful method for detecting identity by descent

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225580

Variation in actual relationship as a consequence of Mendelian sampling and linkage

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225580

Robust relationship inference in genome-wide association studies

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225580

Inference of unexpected genetic relatedness among individuals in HapMap Phase III.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225580

Integrating common and rare genetic variation in diverse human populations

6 July 2018

1 reference

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The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

6 July 2018

1 reference

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Population based allele frequencies of disease associated polymorphisms in the Personalized Medicine Research Project

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225580

Fast and accurate short read alignment with Burrows-Wheeler transform

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225580

FRANz: reconstruction of wild multi-generation pedigrees

6 July 2018

1 reference

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PLINK: a tool set for whole-genome association and population-based linkage analyses

6 July 2018

1 reference

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Towards unbiased parentage assignment: combining genetic, behavioural and spatial data in a Bayesian framework.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225580

Confounding from cryptic relatedness in case-control association studies

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225580

Measuring paternal discrepancy and its public health consequences

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225580

Enhanced pedigree error detection

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225580

Merlin--rapid analysis of dense genetic maps using sparse gene flow trees

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225580

Improved inference of relationship for pairs of individuals

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225580

Statistical confidence for likelihood-based paternity inference in natural populations

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225580

Genetic epidemiology of severe, early-onset chronic obstructive pulmonary disease. Risk to relatives for airflow obstruction and chronic bronchitis.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225580

Accurate inference of relationships in sib-pair linkage studies

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225580

Quantitative linkage for autism spectrum disorders symptoms in attention-deficit/hyperactivity disorder: significant locus on chromosome 7q11.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225580

Maximum likelihood pedigree reconstruction using integer linear programming

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225580

Pedigree reconstruction using identity by descent

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225580

High-throughput pedigree drawing.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225580

Opsismodysplasia resulting from an insertion mutation in the SH2 domain, which destabilizes INPPL1

27 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25439724

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

GRR: graphical representation of relationship errors

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25439724

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Estimating the prevalence of nonpaternity in Germany

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25439724

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.AJHG.2014.10.005

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25439724%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25439724%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25439724%20AND%20SRC:MED&resulttype=core&format=json