Multiconformation continuum electrostatics analysis of the NhaA Na+/H+ antiporter of Escherichia coli with functional implications (Q34479637)

2 August 2017

Multiconformation continuum electrostatics analysis of the NhaA Na+/H+ antiporter of Escherichia coli with functional implications (English)

1 reference

2 August 2017

1 reference

Carola Hunte

2

0 references

Hartmut Michel

series ordinal

5

object named as

Hartmut Michel

1 reference

2 August 2017

Elena Olkhova

1

1 reference

2 August 2017

Emanuela Screpanti

series ordinal

3

1 reference

2 August 2017

Etana Padan

series ordinal

4

1 reference

2 August 2017

language of work or name

English

0 references

publication date

13 February 2006

1 reference

Proceedings of the National Academy of Sciences of the United States of America

2 August 2017

1 reference

2 August 2017

103

1 reference

2 August 2017

8

1 reference

2 August 2017

2629-2634

1 reference

Alkaline pH homeostasis in bacteria: new insights

2 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413810

Crystal structure of a bacterial homologue of Na+/Cl--dependent neurotransmitter transporters

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413810

Structure of a Na+/H+ antiporter and insights into mechanism of action and regulation by pH.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413810

Structure of the rotor of the V-Type Na+-ATPase from Enterococcus hirae

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413810

Lipids in membrane protein structures

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413810

Calculated coupling of transmembrane electron and proton transfer in dihemic quinol:fumarate reductase

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413810

NhaA of Escherichia coli, as a model of a pH-regulated Na+/H+antiporter

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413810

Dynamic water networks in cytochrome C oxidase from Paracoccus denitrificans investigated by molecular dynamics simulations

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413810

Ionization states of residues in OmpF and mutants: effects of dielectric constant and interactions between residues

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413810

The role of electrostatics in proton-conducting membrane protein complexes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413810

Combining conformational flexibility and continuum electrostatics for calculating pK(a)s in proteins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413810

The changing face of the Na+/H+ exchanger, NHE1: structure, regulation, and cellular actions

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413810

What are the dielectric "constants" of proteins and how to validate electrostatic models?

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413810

6 July 2018

Na(+)/H(+) antiporters.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413810

Calculated pH-dependent population and protonation of carbon-monoxy-myoglobin conformers

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413810

A pragmatic approach to structure based calculation of coupled proton and electron transfer in proteins.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413810

The cavity and pore helices in the KcsA K+ channel: electrostatic stabilization of monovalent cations.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413810

Calculations of proton-binding thermodynamics in proteins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413810

Electrostatic contributions to molecular free energies in solution

6 July 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413810

6 July 2018

https://api.crossref.org/works/10.1073%2FPNAS.0510914103

The coupling of electron transfer and proton translocation: electrostatic calculations on Paracoccus denitrificans cytochrome c oxidase

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413810

Incorporating protein conformational flexibility into the calculation of pH-dependent protein properties

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413810

Coupling between folding and ionization equilibria: effects of pH on the conformational preferences of polypeptides.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413810

VMD: visual molecular dynamics

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413810

Calculated coupling of electron and proton transfer in the photosynthetic reaction center of Rhodopseudomonas viridis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413810

Conformation and hydrogen ion titration of proteins: a continuum electrostatic model with conformational flexibility

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413810

Thermodynamics of water mediating protein-ligand interactions in cytochrome P450cam: a molecular dynamics study

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413810

Proton-sodium stoichiometry of NhaA, an electrogenic antiporter from Escherichia coli

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413810

Molecular physiology of Na+/H+ antiporters, key transporters in circulation of Na+ and H+ in cells

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413810

Classical electrostatics in biology and chemistry

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413810

Calculation of electrostatic effects at the amino terminus of an alpha helix

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413810

Electrostatic calculations of amino acid titration and electron transfer, Q-AQB-->QAQ-B, in the reaction center

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413810

Calculations of electrostatic interactions in biological systems and in solutions

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413810

A computational procedure for determining energetically favorable binding sites on biologically important macromolecules

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413810

Electrostatic control of midpoint potentials in the cytochrome subunit of the Rhodopseudomonas viridis reaction center

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413810

Structural Aspects of Metal Liganding to Functional Groups in Proteins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413810

Calculated protein and proton motions coupled to electron transfer: electron transfer from QA- to QB in bacterial photosynthetic reaction centers.

6 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510914103

Optimizing the hydrogen-bond network in Poisson-Boltzmann equation-based pK(a) calculations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510914103

Intracellular axial current in Chara corallina reflects the altered kinetics of ions in cytoplasm under the influence of light

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510914103

Trans membrane domain IV is involved in ion transport activity and pH regulation of the NhaA-Na(+)/H(+) antiporter of Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510914103

Mutation E252C Increases Drastically the K Value for Na+ and Causes an Alkaline Shift of the pH Dependence of NhaA Na+/H+ Antiporter of Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510914103

The architecture of metal coordination groups in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510914103

Structure of the rotor ring of F-Type Na+-ATPase from Ilyobacter tartaricus

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510914103

Functional analysis of conserved polar residues in Vc-NhaD, Na+/H+ antiporter of Vibrio cholerae.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510914103

Conformational changes in azurin from Pseudomona aeruginosa induced through chemical and physical protocols

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510914103

The Monoclonal Antibody 1F6 Identifies a pH-dependent Conformational Change in the Hydrophilic NH2Terminus of NhaA Na+/H+Antiporter ofEscherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510914103

Further development of hydrogen bond functions for use in determining energetically favorable binding sites on molecules of known structure. 2. Ligand probe groups with the ability to form more than two hydrogen bonds

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510914103

Essential aspartic acid residues, Asp-133, Asp-163 and Asp-164, in the transmembrane helices of a Na+/H+ antiporter (NhaA) from Escherichia coli

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16477015

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A pH-dependent conformational change of NhaA Na(+)/H(+) antiporter of Escherichia coli involves loop VIII-IX, plays a role in the pH response of the protein, and is maintained by the pure protein in dodecyl maltoside

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16477015

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Differential extraction of proteins from paraformaldehyde-fixed cells: lessons from synaptophysin and other membrane proteins

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1073/PNAS.0510914103

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1073/PNAS.0510914103

Identifiers

DOI

10.1073/PNAS.0510914103

1 reference

2 August 2017

0 references

1 reference

2 August 2017

1 reference