MACE: model based analysis of ChIP-exo (Q34489641)

2 August 2017

MACE: model based analysis of ChIP-exo (English)

1 reference

2 August 2017

Chen Wang

3

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Michael T. Zimmermann

object named as

Michael T Zimmermann

8

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Michael D. Wilson

object named as

Michael D Wilson

14

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Zhifu Sun

object named as

Zhifu Sun

10

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author name string

Liguo Wang

1

1 reference

2 August 2017

Junsheng Chen

2

1 reference

2 August 2017

Liis Uusküla-Reimand

4

1 reference

2 August 2017

Kaifu Chen

5

1 reference

2 August 2017

Alejandra Medina-Rivera

6

1 reference

2 August 2017

Edwin J Young

7

1 reference

2 August 2017

Huihuang Yan

9

1 reference

2 August 2017

Yuji Zhang

11

1 reference

2 August 2017

Stephen T Wu

12

1 reference

2 August 2017

Haojie Huang

13

1 reference

2 August 2017

Jean-Pierre A Kocher

15

1 reference

2 August 2017

Wei Li

16

1 reference

2 August 2017

language of work or name

English

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publication date

23 September 2014

1 reference

2 August 2017

Nucleic Acids Research

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2 August 2017

42

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2 August 2017

e156

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2 August 2017

20

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Creative Commons Attribution 4.0 International

2 August 2017

start time

3 May 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

Genomic organization of human transcription initiation complexes

1 reference

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A genome-wide map of CTCF multivalency redefines the CTCF code

6 July 2018

1 reference

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A CpG mutational hotspot in a ONECUT binding site accounts for the prevalent variant of hemophilia B Leyden

6 July 2018

1 reference

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DNA-binding specificities of human transcription factors

6 July 2018

1 reference

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ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

6 July 2018

1 reference

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High resolution genome wide binding event finding and motif discovery reveals transcription factor spatial binding constraints

6 July 2018

1 reference

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Genome-wide structure and organization of eukaryotic pre-initiation complexes

6 July 2018

1 reference

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Comprehensive genome-wide protein-DNA interactions detected at single-nucleotide resolution

6 July 2018

1 reference

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Regulation of nucleosome landscape and transcription factor targeting at tissue-specific enhancers by BRG1

6 July 2018

1 reference

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A user's guide to the encyclopedia of DNA elements (ENCODE)

6 July 2018

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Nucleosome fragility reveals novel functional states of chromatin and poises genes for activation

6 July 2018

1 reference

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ChIP-chip versus ChIP-seq: lessons for experimental design and data analysis.

6 July 2018

1 reference

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FIMO: scanning for occurrences of a given motif

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4227761

Discovering homotypic binding events at high spatial resolution.

6 July 2018

1 reference

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Prediction of nucleosome positioning based on transcription factor binding sites

6 July 2018

1 reference

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Biases in Illumina transcriptome sequencing caused by random hexamer priming

6 July 2018

1 reference

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The current state of chromatin immunoprecipitation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4227761

JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles

6 July 2018

1 reference

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Interaction of transcriptional regulators with specific nucleosomes across the Saccharomyces genome

6 July 2018

1 reference

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Mechanisms that specify promoter nucleosome location and identity

6 July 2018

1 reference

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ChIP-seq: using high-throughput sequencing to discover protein-DNA interactions

6 July 2018

1 reference

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

6 July 2018

1 reference

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Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data

6 July 2018

1 reference

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PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4227761

An integrated software system for analyzing ChIP-chip and ChIP-seq data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4227761

Model-based analysis of ChIP-Seq (MACS)

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4227761

F-Seq: a feature density estimator for high-throughput sequence tags

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4227761

Modeling ChIP sequencing in silico with applications

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4227761

Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4227761

The insulator binding protein CTCF positions 20 nucleosomes around its binding sites across the human genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4227761

FindPeaks 3.1: a tool for identifying areas of enrichment from massively parallel short-read sequencing technology

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4227761

Mapping of transcription factor binding regions in mammalian cells by ChIP: comparison of array- and sequencing-based technologies

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4227761

ChIPOTle: a user-friendly tool for the analysis of ChIP-chip data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4227761

TileMap: create chromosomal map of tiling array hybridizations

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4227761

6 July 2018

Identifiers

DOI

10.1093/NAR/GKU846

1 reference

2 August 2017

1 reference

2 August 2017

1 reference