HAMAP in 2013, new developments in the protein family classification and annotation system (Q34495199)

2 August 2017

HAMAP in 2013, new developments in the protein family classification and annotation system (English)

1 reference

2 August 2017

1 reference

4

0 references

Ioannis Xenarios

12

0 references

Catherine Rivoire

Catherine Rivoire

2

0 references

Ivo Pedruzzi

Ivo Pedruzzi

1

0 references

Edouard de Castro

Edouard de Castro

6

0 references

Sylvain Poux

Sylvain Poux

10

0 references

Nicole Redaschi

Nicole Redaschi

11

0 references

Alan J Bridge

Alan Bridge

13

0 references

Lydie Bougueleret

9

Lydie Bougueleret

1 reference

2 August 2017

14

UniProt Consortium

1 reference

2 August 2017

Andrea H Auchincloss

3

1 reference

2 August 2017

Guillaume Keller

5

1 reference

2 August 2017

Delphine Baratin

7

1 reference

2 August 2017

Béatrice A Cuche

8

1 reference

2 August 2017

language of work or name

English

0 references

publication date

27 November 2012

1 reference

2 August 2017

Nucleic Acids Research

1 reference

2 August 2017

41

1 reference

2 August 2017

Database issue

1 reference

2 August 2017

D584-9

1 reference

Creative Commons Attribution-NonCommercial 3.0 Unported

2 August 2017

start time

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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The Pfam protein families database

6 July 2018

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The UniProt-GO Annotation database in 2011.

6 July 2018

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Reorganizing the protein space at the Universal Protein Resource (UniProt)

6 July 2018

1 reference

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UniPathway: a resource for the exploration and annotation of metabolic pathways

6 July 2018

1 reference

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The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

6 July 2018

1 reference

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The Gene Ontology: enhancements for 2011

6 July 2018

1 reference

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InterPro in 2011: new developments in the family and domain prediction database

6 July 2018

1 reference

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6 July 2018

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The International Nucleotide Sequence Database Collaboration

6 July 2018

1 reference

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KEGG for integration and interpretation of large-scale molecular data sets

6 July 2018

1 reference

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OrthoDB: the hierarchical catalog of eukaryotic orthologs in 2011

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531088

Systematizing the generation of missing metabolic knowledge

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531088

A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531088

Annotation error in public databases: misannotation of molecular function in enzyme superfamilies

6 July 2018

1 reference

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PROSITE, a protein domain database for functional characterization and annotation

6 July 2018

1 reference

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Databases of homologous gene families for comparative genomics

6 July 2018

1 reference

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HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-Prot

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531088

Toward an online repository of Standard Operating Procedures (SOPs) for (meta)genomic annotation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531088

Toward the automated generation of genome-scale metabolic networks in the SEED.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531088

TIGRFAMs and Genome Properties: tools for the assignment of molecular function and biological process in prokaryotic genomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531088

Towards multidimensional genome annotation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531088

Enzyme-specific profiles for genome annotation: PRIAM

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531088

Automated annotation of microbial proteomes in SWISS-PROT.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531088

Applications of InterPro in protein annotation and genome analysis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531088

Automatic rule generation for protein annotation with the C4.5 data mining algorithm applied on SWISS-PROT.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531088

Basic local alignment search tool

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531088

Structure-guided rule-based annotation of protein functional sites in UniProt knowledgebase

6 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKS1157

A novel method for automatic functional annotation of proteins

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKS1157

Making sense of score statistics for sequence alignments

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKS1157

21 January 2018

Identifiers

DOI

10.1093/NAR/GKS1157

1 reference

journals/nar/PedruzziRACKCBCBPRXB13

2 August 2017

1 reference

DBLP Dataset 2021-01-02

release_sqtfh5uppnhhdoriuglbtrnlsu

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/sqtfh5uppnhhdoriuglbtrnlsu

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMCID

3531088

1 reference

2 August 2017

1 reference