COFFDROP: A Coarse-Grained Nonbonded Force Field for Proteins Derived from All-Atom Explicit-Solvent Molecular Dynamics Simulations of Amino Acids (Q34503075)

From Wikidata

Jump to navigation Jump to search

scientific article

Language	Label	Description	Also known as
English	COFFDROP: A Coarse-Grained Nonbonded Force Field for Proteins Derived from All-Atom Explicit-Solvent Molecular Dynamics Simulations of Amino Acids	scientific article

Statements

scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

COFFDROP: A Coarse-Grained Nonbonded Force Field for Proteins Derived from All-Atom Explicit-Solvent Molecular Dynamics Simulations of Amino Acids (English)

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

1 reference

based on heuristic

inferred from title

Adrian H Elcock

object named as

Adrian H Elcock

2

0 references

author name string

Casey T Andrews

1

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

publication date

7 October 2014

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

Journal of Chemical Theory and Computation

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

10

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

11

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

5178-5194

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

Improved Parameters for the Martini Coarse-Grained Protein Force Field.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

MagiC: Software Package for Multiscale Modeling.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

The power of coarse graining in biomolecular simulations.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

Are current atomistic force fields accurate enough to study proteins in crowded environments?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

Molecular dynamics simulations of highly crowded amino acid solutions: comparisons of eight different force field combinations with experiment and with each other

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

An experimentally-informed coarse-grained 3-Site-Per-Nucleotide model of DNA: structure, thermodynamics, and dynamics of hybridization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

Perspective: Coarse-grained models for biomolecular systems

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

Mature HIV-1 capsid structure by cryo-electron microscopy and all-atom molecular dynamics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

Coarse-graining methods for computational biology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

Reduced atomic pair-interaction design (RAPID) model for simulations of proteins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

Comparison of Secondary Structure Formation Using 10 Different Force Fields in Microsecond Molecular Dynamics Simulations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

Are Protein Force Fields Getting Better? A Systematic Benchmark on 524 Diverse NMR Measurements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

On developing coarse-grained models for biomolecular simulation: a review

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

Systematic validation of protein force fields against experimental data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

Coarse-grained molecular simulations of large biomolecules

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

Moving beyond Watson-Crick models of coarse grained DNA dynamics.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

Accelerating molecular Monte Carlo simulations using distance and orientation-dependent energy tables: tuning from atomistic accuracy to smoothed "coarse-grained" models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

Capturing the essence of folding and functions of biomolecules using coarse-grained models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

Multiscale ensemble modeling of intrinsically disordered proteins: p53 N-terminal domain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

Coarse-grained modeling for macromolecular chemistry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

Coarse-grained models to study dynamics of nanoscale biomolecules and their applications to the ribosome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

Brownian dynamics simulation of protein solutions: structural and dynamical properties

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

A structurally relevant coarse-grained model for cholesterol

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

Absolute protein-protein association rate constants from flexible, coarse-grained Brownian dynamics simulations: the role of intermolecular hydrodynamic interactions in barnase-barstar association

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

Coarse-grained (multiscale) simulations in studies of biophysical and chemical systems

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

Atomic-Level Characterization of the Structural Dynamics of Proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

A systematically coarse-grained solvent-free model for quantitative phospholipid bilayer simulations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

Scrutinizing molecular mechanics force fields on the submicrosecond timescale with NMR data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

Multiscale coarse-graining of the protein energy landscape

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

Polarizable water model for the coarse-grained MARTINI force field

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

An implicit solvent coarse-grained lipid model with correct stress profile

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

Improved side-chain torsion potentials for the Amber ff99SB protein force field

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

A coarse-grained model for amorphous and crystalline fatty acids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

Multiscale simulation of soft matter systems

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

Generic coarse-grained model for protein folding and aggregation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

Insights from coarse-grained Gō models for protein folding and dynamics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

A coarse-grained potential for fold recognition and molecular dynamics simulations of proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

Multiscale modeling of emergent materials: biological and soft matter

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

Solvent-free lipid bilayer model using multiscale coarse-graining

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

Systematic coarse-graining of a multicomponent lipid bilayer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

Multiscale methods for macromolecular simulations.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

The multiscale coarse-graining method. II. Numerical implementation for coarse-grained molecular models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

Coarse-grained models of protein folding: toy models or predictive tools?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

Coarse-grained models for simulations of multiprotein complexes: application to ubiquitin binding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

Mapping folding energy landscapes with theory and experiment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

A coarse-grained protein force field for folding and structure prediction.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

The MARTINI force field: coarse grained model for biomolecular simulations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

Coarse-grained peptide modeling using a systematic multiscale approach

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

Multiscale modeling of biomolecular systems: in serial and in parallel

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

Comparison of multiple Amber force fields and development of improved protein backbone parameters

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

Molecular simulations of cotranslational protein folding: fragment stabilities, folding cooperativity, and trapping in the ribosome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

A new generation of statistical potentials for proteins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

Empirical potential function for simplified protein models: combining contact and local sequence-structure descriptors.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

GROMACS: fast, flexible, and free

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

Coarse-grained models for proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

Probing site-specific conformational distributions in protein folding with solid-state NMR

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

Development of an improved four-site water model for biomolecular simulations: TIP4P-Ew

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

Development of novel statistical potentials for protein fold recognition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

Orientational potentials extracted from protein structures improve native fold recognition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

A mesoscopic model for protein-protein interactions in solution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

Calculation of weak protein-protein interactions: the pH dependence of the second virial coefficient

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

Canonical dynamics: Equilibrium phase-space distributions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

Protein interactions in solution characterized by light and neutron scattering: comparison of lysozyme and chymotrypsinogen

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

Estimation of macromolecule concentrations and excluded volume effects for the cytoplasm of Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

Studies on protein folding, unfolding and fluctuations by computer simulation. I. The effect of specific amino acid sequence represented by specific inter-unit interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

Medium- and long-range interaction parameters between amino acids for predicting three-dimensional structures of proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

7 July 2018

The MARTINI Coarse-Grained Force Field: Extension to Proteins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

27 October 2018

Toward optimized potential functions for protein-protein interactions in aqueous solutions: osmotic second virial coefficient calculations using the MARTINI coarse-grained force field

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

27 October 2018

Sequence-dependent thermodynamics of a coarse-grained DNA model.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

27 October 2018

Atomic detail brownian dynamics simulations of concentrated protein solutions with a mean field treatment of hydrodynamic interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

27 October 2018

Dissecting force interactions in cellulose deconstruction reveals the required solvent versatility for overcoming biomass recalcitrance

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

27 October 2018

Systematic coarse-graining of molecular models by the Newton inversion method

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

27 October 2018

Pairwise energies for polypeptide coarse-grained models derived from atomic force fields.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

27 October 2018

Multiscale coarse-graining of monosaccharides.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

27 October 2018

Coarse-grained model for phospholipid/cholesterol bilayer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

27 October 2018

Deriving effective mesoscale potentials from atomistic simulations.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

27 October 2018

Statistical potentials extracted from protein structures: how accurate are they?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

27 October 2018

Multiscale coarse graining of liquid-state systems

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230375

9 December 2018

A comparison of the value of viscosity for several water models using Poiseuille flow in a nano-channel

1 reference

https://pubmed.ncbi.nlm.nih.gov/25400526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mixed atomistic and coarse-grained molecular dynamics: simulation of a membrane-bound ion channel

1 reference

https://pubmed.ncbi.nlm.nih.gov/25400526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Multiscale modeling of lipids and lipid bilayers

1 reference

https://pubmed.ncbi.nlm.nih.gov/25400526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Peptide folding using multiscale coarse-grained models

1 reference

https://pubmed.ncbi.nlm.nih.gov/25400526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Direct Measurement of the Kinetics and Thermodynamics of Association of Hydrophobic Molecules from Molecular Dynamics Simulations

1 reference

https://pubmed.ncbi.nlm.nih.gov/25400526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A Solvent-Free Coarse Grain Model for Crystalline and Amorphous Cellulose Fibrils

1 reference

https://pubmed.ncbi.nlm.nih.gov/25400526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Atomically detailed simulations of concentrated protein solutions: the effects of salt, pH, point mutations, and protein concentration in simulations of 1000-molecule systems

1 reference

https://pubmed.ncbi.nlm.nih.gov/25400526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A multiscale coarse-graining method for biomolecular systems

1 reference

https://pubmed.ncbi.nlm.nih.gov/25400526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Another look at the conditions for the extraction of protein knowledge-based potentials

1 reference

https://pubmed.ncbi.nlm.nih.gov/25400526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Coarse-grained protein model with residue orientation energies derived from atomic force fields

1 reference

https://pubmed.ncbi.nlm.nih.gov/25400526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Multiscale Coarse-Graining of Mixed Phospholipid/Cholesterol Bilayers

1 reference

https://pubmed.ncbi.nlm.nih.gov/25400526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Striking Effects of Hydrodynamic Interactions on the Simulated Diffusion and Folding of Proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/25400526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Calculation of effective interaction potentials from radial distribution functions: A reverse Monte Carlo approach

1 reference

https://pubmed.ncbi.nlm.nih.gov/25400526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Coarse-grained model for predicting RNA folding thermodynamics

1 reference

https://pubmed.ncbi.nlm.nih.gov/25400526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

On the charge regulation of proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/25400526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1021/CT5006328

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

ResearchGate publication ID

0 references

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q34503075&oldid=1445801457"