Versatile design and synthesis platform for visualizing genomes with Oligopaint FISH probes (Q34510083)

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20 February 2020

title

Versatile design and synthesis platform for visualizing genomes with Oligopaint FISH probes (English)

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20 February 2020

1 reference

0 references

1

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20 February 2020

author name string

Eric F Joyce

2

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20 February 2020

Nicholas Apostolopoulos

3

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20 February 2020

Feyza Yilmaz

4

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20 February 2020

Chamith Y Fonseka

5

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20 February 2020

Ruth B McCole

6

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20 February 2020

Yiming Chang

7

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20 February 2020

Jin Billy Li

8

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20 February 2020

Tharanga Niroshini Senaratne

9

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20 February 2020

Benjamin R Williams

10

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20 February 2020

Jean-Marie Rouillard

11

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20 February 2020

Chao-ting Wu

12

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20 February 2020

language of work or name

English

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publication date

11 December 2012

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20 February 2020

number of pages

6

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Proceedings of the National Academy of Sciences of the United States of America

inferred from page(s)

published in

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20 February 2020

volume

109

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20 February 2020

page(s)

21301-21306

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20 February 2020

issue

52

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A versatile genome-scale PCR-based pipeline for high-definition DNA FISH.

20 February 2020

cites work

1 reference

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Identification of genes that promote or antagonize somatic homolog pairing using a high-throughput FISH-based screen

7 July 2018

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Applications of peptide nucleic acids (PNAs) and locked nucleic acids (LNAs) in biosensor development

7 July 2018

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7 July 2018

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Super-resolution fluorescence microscopy as a tool to study the nanoscale organization of chromosomes

7 July 2018

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Fluorescence in situ hybridization with high-complexity repeat-free oligonucleotide probes generated by massively parallel synthesis

7 July 2018

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Validating transcripts with probes and imaging technology

7 July 2018

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Visualization of fine-scale genomic structure by oligonucleotide-based high-resolution FISH.

7 July 2018

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Breaking the diffraction barrier: super-resolution imaging of cells

7 July 2018

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COMBO-FISH enables high precision localization microscopy as a prerequisite for nanostructure analysis of genome loci

7 July 2018

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Single-molecule kinetics and super-resolution microscopy by fluorescence imaging of transient binding on DNA origami

7 July 2018

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7 July 2018

Chromosome territories

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Comprehensive mapping of long-range interactions reveals folding principles of the human genome

7 July 2018

1 reference

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Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing

7 July 2018

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FISH glossary: an overview of the fluorescence in situ hybridization technique

7 July 2018

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Imaging individual mRNA molecules using multiple singly labeled probes

7 July 2018

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UNAFold: software for nucleic acid folding and hybridization

7 July 2018

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Multiplex amplification of large sets of human exons

7 July 2018

1 reference

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Polycomb response elements mediate the formation of chromosome higher-order structures in the bithorax complex.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535588

Discovery of natural nicking endonucleases Nb.BsrDI and Nb.BtsI and engineering of top-strand nicking variants from BsrDI and BtsI.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535588

Self-assembled combinatorial encoding nanoarrays for multiplexed biosensing.

7 July 2018

1 reference

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Single-gene detection and karyotyping using small-target fluorescence in situ hybridization on maize somatic chromosomes

7 July 2018

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Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM)

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535588

Folding and organization of a contiguous chromosome region according to the gene distribution pattern in primary genomic sequence

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535588

Amplification of complex gene libraries by emulsion PCR.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535588

The use of peptide nucleic acids for in situ identification of human chromosomes

7 July 2018

1 reference

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Chromatin organization in the mammalian nucleus

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535588

FISHing with locked nucleic acids (LNA): evaluation of different LNA/DNA mixmers

7 July 2018

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Fluorescence in situ hybridization: past, present and future

7 July 2018

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OligoArray 2.0: design of oligonucleotide probes for DNA microarrays using a thermodynamic approach

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535588

Capturing chromosome conformation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535588

c(3)G encodes a Drosophila synaptonemal complex protein

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535588

New strategy for multi-colour fluorescence in situ hybridisation: COBRA: COmbined Binary RAtio labelling

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535588

Visualization of single RNA transcripts in situ

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535588

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535588

Heterogeneity in telomere length of human chromosomes.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535588

A 450 kb transgene displays properties of the mammalian X-inactivation center.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535588

Multicolor Spectral Karyotyping of Human Chromosomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535588

Karyotyping human chromosomes by combinatorial multi-fluor FISH.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535588

A new method for fluorescence microscopical localization of specific DNA sequences by in situ hybridization of fluorochrome-labelled RNA

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535588

Molecular hybridization of radioactive DNA to the DNA of cytological preparations

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535588

Detection of proopiomelanocortin mRNA by in situ hybridization, using a biotinylated oligodeoxynucleotide probe and avidin-alkaline phosphatase histochemistry

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535588

Delineation of individual human chromosomes in metaphase and interphase cells by in situ suppression hybridization using recombinant DNA libraries

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535588

A gene from the region of the human X inactivation centre is expressed exclusively from the inactive X chromosome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535588

Perturbation of nuclear architecture by long-distance chromosome interactions.

7 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1213818110

PROBER: oligonucleotide FISH probe design software.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1213818110

Combined immunofluorescence, RNA fluorescent in situ hybridization, and DNA fluorescent in situ hybridization to study chromatin changes, transcriptional activity, nuclear organization, and X-chromosome inactivation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1213818110

Multiplexed detection of pathogen DNA with DNA-based fluorescence nanobarcodes

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1213818110

Single-copy gene detection using branched DNA (bDNA) in situ hybridization

21 January 2018

1 reference

12 December 2020

Structural comparison of the two distinct sugar binding sites in wheat germ agglutinin isolectin II

1 reference

12 December 2020

Use of whole cosmid cloned genomic sequences for chromosomal localization by non-radioactive in situ hybridization

1 reference

12 December 2020

Oligonucleotide probes for alpha satellite DNA variants can distinguish homologous chromosomes by FISH

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.1213818110

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23236188%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23236188%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23236188%20AND%20SRC:MED&resulttype=core&format=json