Species-level resolution of 16S rRNA gene amplicons sequenced through the MinION™ portable nanopore sequencer. (Q34511333)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26823973%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

title

Species-level resolution of 16S rRNA gene amplicons sequenced through the MinION™ portable nanopore sequencer (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26823973%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

1 reference

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26823973%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

Kevin Portune

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26823973%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

Yolanda Sanz

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26823973%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

3

Yolanda Sanz

1 reference

PubMed publication ID

2 August 2017

Alfonso Benítez-Páez

1

1 reference

PubMed publication ID

26823973

2 August 2017

publication date

28 January 2016

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26823973%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26823973%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

volume

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26823973%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

page(s)

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26823973%20AND%20SRC:MED&resulttype=core&format=json

Rapid draft sequencing and real-time nanopore sequencing in a hospital outbreak of Salmonella

6 March 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4730766

Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4730766

Bacterial and viral identification and differentiation by amplicon sequencing on the MinION nanopore sequencer

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4730766

Inconsistent Denoising and Clustering Algorithms for Amplicon Sequence Data.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4730766

MinION nanopore sequencing identifies the position and structure of a bacterial antibiotic resistance island

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4730766

A reference bacterial genome dataset generated on the MinION™ portable single-molecule nanopore sequencer.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4730766

A first look at the Oxford Nanopore MinION sequencer

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4730766

poRe: an R package for the visualization and analysis of nanopore sequencing data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4730766

Limits to robustness and reproducibility in the demarcation of operational taxonomic units

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4730766

Poretools: a toolkit for analyzing nanopore sequence data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4730766

Evaluation and validation of de novo and hybrid assembly techniques to derive high-quality genome sequences

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4730766

Ecological consistency of SSU rRNA-based operational taxonomic units at a global scale

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4730766

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4730766

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4730766

Parameters for accurate genome alignment

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4730766

The Sequence Alignment/Map format and SAMtools

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4730766

probeBase--an online resource for rRNA-targeted oligonucleotide probes: new features 2007.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4730766

Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4730766

SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes.

7 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS13742-016-0111-Z

10.1186/S13742-016-0111-Z

21 January 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26823973%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

6 March 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26823973%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

PubMed publication ID

26823973

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26823973%20AND%20SRC:MED&resulttype=core&format=json