The transcriptomic fingerprint of glucoamylase over-expression in Aspergillus niger. (Q34511546)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237452%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

title

The transcriptomic fingerprint of glucoamylase over-expression in Aspergillus niger (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237452%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

0 references

0 references

Putative signal peptidase complex subunit

1 reference

Ortholog(s) have GTP-Rho binding, phosphatidylinositol-4,5-bisphosphate binding activity and role in Golgi to plasma membrane transport, endoplasmic reticulum inheritance, exocyst assembly, exocyst localization

5 February 2019

1 reference

ARF guanine nucleotide exchange factor

5 February 2019

1 reference

Small COPII coat GTPase sarA, putative

5 February 2019

1 reference

Protein with a predicted role in COPII vesicle fusion

5 February 2019

1 reference

Protein disulfide isomerase

5 February 2019

1 reference

5 February 2019

COPII complexn subunit

1 reference

Ortholog(s) have endoplasmic reticulum localization

5 February 2019

1 reference

Predicted mannan endo-1,6-alpha-mannosidase

5 February 2019

1 reference

Putative peptidyl-prolyl isomerase

5 February 2019

1 reference

5 February 2019

1 reference

Putative calnexin, integral membrane ER chaperone

5 February 2019

1 reference

Ortholog(s) have alpha-1,6-mannosyltransferase activity, role in dolichol-linked oligosaccharide biosynthetic process, protein glycosylation and endoplasmic reticulum localization

5 February 2019

1 reference

Ortholog(s) have role in ER to Golgi vesicle-mediated transport and ER to Golgi transport vesicle, endoplasmic reticulum, plasma membrane localization

5 February 2019

1 reference

Putative alpha-glucosidase

5 February 2019

1 reference

Putative SEC61 complex subunit

5 February 2019

1 reference

5 February 2019

mRNP complex component

1 reference

Mannosyl-oligosaccharide 1,2-alpha-mannosidase

5 February 2019

1 reference

Putative ubiquitin-protein ligase

5 February 2019

1 reference

Putative SEC63 complex subunit

5 February 2019

1 reference

ER nucleotide exchange factor

5 February 2019

1 reference

5 February 2019

Putative ERAD component

1 reference

Ortholog(s) have role in ER to Golgi vesicle-mediated transport, Golgi inheritance, Golgi localization, retrograde vesicle-mediated transport, Golgi to ER and COPI vesicle coat localization

5 February 2019

1 reference

Putative SEC63 complex subunit

5 February 2019

1 reference

5 February 2019

COPII complex subunit

1 reference

Predicted mannan endo-1,6-alpha-mannosidase

5 February 2019

1 reference

Protein with a predicted role in retention of ER membrane proteins

5 February 2019

1 reference

Ortholog(s) have endoplasmic reticulum localization

5 February 2019

1 reference

UDP N-acetylglucosamine:dolichol phosphate N-acetyl-glucosaminephosphotransferase, involved in the assembly of dolichol-linked oligosaccharides for N-linked protein glycosylation

5 February 2019

1 reference

Ortholog(s) have role in endocytosis, establishment or maintenance of actin cytoskeleton polarity, vacuole organization and integral component of Golgi membrane localization

5 February 2019

1 reference

Putative vesicular integral-membrane protein

5 February 2019

1 reference

COPI complex, beta' subunit

5 February 2019

1 reference

Ortholog(s) have cytosol, nucleus localization

5 February 2019

1 reference

Putative phosphoglucomutase

5 February 2019

1 reference

Putative secretory protein

5 February 2019

1 reference

UDP-galactopyranose mutase, involved in cell wall biosynthesis

5 February 2019

1 reference

Putative vacuolar alpha-mannosidase

5 February 2019

1 reference

Putative glucosyltransferase

5 February 2019

1 reference

Putative acetyl CoA transporter

5 February 2019

1 reference

Ortholog(s) have role in CVT pathway, establishment of cell polarity, filamentous growth of a population of unicellular organisms, pexophagy, retrograde transport, vesicle recycling within Golgi

5 February 2019

1 reference

P-type Ca2+-ATPase involved in the secretory pathway

5 February 2019

1 reference

Oligosaccharyltransferase complex alpha subunit

5 February 2019

1 reference

Protein disulfide isomerase

5 February 2019

1 reference

Oligosaccharyltransferase complex, gamma subunit

5 February 2019

1 reference

5 February 2019

1 reference

5 February 2019

Protein with a predicted role in ER SRP-dependent and -independent protein targeting

1 reference

Putative dolichyl-phosphate glucosyltransferase

5 February 2019

1 reference

Protein with a predicted role in COPII vesicle fusion

5 February 2019

1 reference

Putative glutamine:fructose-6-phosphate amidotransferase

5 February 2019

1 reference

1,4-alpha-D-glucan glucohydrolase

5 February 2019

1 reference

Ortholog(s) have UDP-N-acetylglucosamine transmembrane transporter activity and role in UDP-N-acetylglucosamine transport, UDP-glucose transport, fungal-type cell wall chitin biosynthetic process, transmembrane transport

5 February 2019

1 reference

5 February 2019

COPII complex subunit

1 reference

5 February 2019

COPII vesicle component

1 reference

Putative zinc metalloprotease similar to S. cerevisiae STE24

5 February 2019

1 reference

Putative centromere protein

5 February 2019

1 reference

ER peptidyl-prolyl cis-trans isomerase

5 February 2019

1 reference

Putative clathrin heavy chain

5 February 2019

1 reference

Putative mannose-phosphate-dolichol utilization protein

5 February 2019

1 reference

Mannose-1-phosphate guanylyltransferase

5 February 2019

1 reference

Geranylgeranyltransferase alpha subunit

5 February 2019

1 reference

Ortholog(s) have role in cell separation after cytokinesis and cell cortex of growing cell tip, cell division site, exocyst, lateral cell cortex, mitotic spindle pole body, nucleus localization

5 February 2019

1 reference

Ortholog(s) have role in SRP-dependent cotranslational protein targeting to membrane, translocation and cytosol, nucleus, signal recognition particle, endoplasmic reticulum targeting localization

5 February 2019

1 reference

Transcriptional regulator of starch degradation

6 February 2019

1 reference

Extracellular alpha-glucosidase pro-protein

6 February 2019

1 reference

6 February 2019

1 reference

6 February 2019

Putative TRAPP complex subunit

1 reference

Ortholog(s) have endoplasmic reticulum localization

6 February 2019

1 reference

COPII vesicle membrane component

6 February 2019

1 reference

Signal recognition particle (SRP) receptor beta subunit

6 February 2019

1 reference

6 February 2019

1 reference

Ortholog of A. fumigatus Af293 : Afu6g14040/och2, A. oryzae RIB40 : AO090003001503, Neosartorya fischeri NRRL 181 : NFIA_059930 and Aspergillus niger ATCC 1015 : 189528-mRNA

6 February 2019

1 reference

Ortholog(s) have beta-1,4-mannosyltransferase activity, role in establishment or maintenance of cell polarity, oligosaccharide-lipid intermediate biosynthetic process, protein N-linked glycosylation and endoplasmic reticulum localization

6 February 2019

1 reference

Conserved endosomal membrane protein

6 February 2019

1 reference

Putative class I alpha-mannosidase

6 February 2019

1 reference

6 February 2019

1 reference

6 February 2019

Putative guanine nucleotide exchange factor

1 reference

Oligosaccharyltransferase complex beta subunit

6 February 2019

1 reference

COPI complex, gamma subunit

6 February 2019

1 reference

Ortholog(s) have UDP-glucose:glycoprotein glucosyltransferase activity, calcium ion binding, mannose binding, misfolded protein binding activity

6 February 2019

1 reference

ER retention HDEL-receptor

6 February 2019

1 reference

Ortholog of A. nidulans FGSC A4 : AN3821, A. fumigatus Af293 : Afu2g03650, A. oryzae RIB40 : AO090120000220, Aspergillus wentii : Aspwe1_0172303 and Aspergillus sydowii : Aspsy1_0030705

6 February 2019

1 reference

Ortholog(s) have receptor activity, role in ER to Golgi vesicle-mediated transport, ascospore formation, axial cellular bud site selection and ER to Golgi transport vesicle, endoplasmic reticulum membrane localization

6 February 2019

1 reference

6 February 2019

1 reference

Ortholog(s) have dolichyl-phosphate-mannose-protein mannosyltransferase activity

6 February 2019

1 reference

Putative Golgi-matrix protein

6 February 2019

1 reference

Ortholog(s) have protein serine/threonine phosphatase activity

6 February 2019

1 reference

Ortholog of A. fumigatus Af293 : Afu8g01030, A. niger CBS 513.88 : An08g09900, Neosartorya fischeri NRRL 181 : NFIA_094470 and Aspergillus wentii : Aspwe1_0039768

6 February 2019

1 reference

COPI complex, beta subunit

6 February 2019

1 reference

COPII vesicle membrane component

6 February 2019

1 reference

Putative glycoprotein cargo receptor

6 February 2019

1 reference

6 February 2019

1 reference

Ortholog(s) have role in Golgi to plasma membrane transport, endoplasmic reticulum inheritance, establishment or maintenance of cell polarity, exocyst assembly

6 February 2019

1 reference

COPI complex, epsilon subunit

6 February 2019

1 reference

SNARE complex assembly protein

6 February 2019

1 reference

Putative mannosyltransferase

6 February 2019

1 reference

Ortholog(s) have role in Golgi to plasma membrane transport, exocyst assembly, exocyst localization, spliceosomal complex assembly

6 February 2019

1 reference

6 February 2019

COPII complex subunit

1 reference

GPI-anchored alpha-glucanosyltransferase

6 February 2019

1 reference

Secreted alpha-xylosidase

6 February 2019

1 reference

Putative signal peptidase complex subunit

6 February 2019

1 reference

6 February 2019

1 reference

6 February 2019

1 reference

6 February 2019

1 reference

Has domain(s) with predicted catalytic activity

6 February 2019

1 reference

Mannose-1-phosphate guanylyltransferase

6 February 2019

1 reference

Putative acid alpha-amylase

6 February 2019

1 reference

DnaK-type molecular chaperone

6 February 2019

1 reference

6 February 2019

1 reference

Ortholog(s) have dolichyl-phosphate-mannose-protein mannosyltransferase activity

6 February 2019

1 reference

6 February 2019

1 reference

Putative ER glucosyl hydrolase

6 February 2019

1 reference

6 February 2019

1 reference

6 February 2019

Putative glutathione S-transferase

1 reference

Ortholog(s) have role in retrograde vesicle-mediated transport, Golgi to ER and COPI vesicle coat, cytosol, nucleus localization

6 February 2019

1 reference

Putative glucosidase II, beta subunit

6 February 2019

1 reference

6 February 2019

1 reference

Putative mannosyltransferase

6 February 2019

1 reference

Putative ER associated protein degradation protein

6 February 2019

1 reference

Ortholog(s) have SNAP receptor activity and role in ER to Golgi vesicle-mediated transport, retrograde vesicle-mediated transport, Golgi to ER, vesicle fusion with Golgi apparatus

6 February 2019

1 reference

6 February 2019

1 reference

6 February 2019

Ortholog of A. nidulans FGSC A4 : AN6615, A. fumigatus Af293 : Afu6g03960, A. oryzae RIB40 : AO090701000149, Aspergillus wentii : Aspwe1_0048642 and Aspergillus sydowii : Aspsy1_0214118

1 reference

Ortholog(s) have GTP binding, signal recognition particle binding activity, role in protein targeting to ER and cytosol, nucleus, signal recognition particle receptor complex localization

6 February 2019

1 reference

Ortholog(s) have alpha-1,6-mannosyltransferase activity and role in ascospore formation, barrier septum assembly, cell wall mannoprotein biosynthetic process, protein N-linked glycosylation

6 February 2019

1 reference

Putative alpha-1,3-mannosyltransferase

6 February 2019

1 reference

Putative signal sequence receptor alpha

6 February 2019

1 reference

Has domain(s) with predicted oxidoreductase activity, transferase activity, transferring acyl groups other than amino-acyl groups, zinc ion binding activity and role in oxidation-reduction process

6 February 2019

1 reference

COPI complex. alpha subunit

6 February 2019

1 reference

Ortholog(s) have cytosol localization

6 February 2019

1 reference

ER dolichyl-phosphate beta-d-mannosyltransferase

6 February 2019

1 reference

Ortholog(s) have GTPase activator activity and role in COPI coating of Golgi vesicle, ER to Golgi vesicle-mediated transport, retrograde vesicle-mediated transport, Golgi to ER

6 February 2019

1 reference

Putative signal peptidase complex subunit

6 February 2019

1 reference

6 February 2019

Putative thiol oxidase

1 reference

Putative ubiquitin-protein ligase

6 February 2019

1 reference

6 February 2019

1 reference

Putative O-mannosyltransferase

6 February 2019

1 reference

Oligosaccharyltransferase complex subunit

6 February 2019

1 reference

Putative SEC63 complex subunit

6 February 2019

1 reference

6 February 2019

1 reference

6 February 2019

1 reference

Protein disulfide isomerase

6 February 2019

1 reference

Putative mannosyltransferase, involved in N-linked glycosylation

6 February 2019

1 reference

Putative guanine nucleotide exchange factor

6 February 2019

1 reference

Putative oligosaccharyltransferase complex, epsilon subunit

6 February 2019

1 reference

UDP-galactose transporter

6 February 2019

1 reference

Has domain(s) with predicted hydrolase activity, hydrolyzing O-glycosyl compounds activity and role in carbohydrate metabolic process

6 February 2019

1 reference

Alpha-1,2-mannosyltransferase

6 February 2019

1 reference

6 February 2019

Putative ERAD component

1 reference

Ortholog(s) have role in ER to Golgi vesicle-mediated transport and ER to Golgi transport vesicle, Golgi apparatus, endoplasmic reticulum localization

6 February 2019

1 reference

6 February 2019

Putative DNA-J protein

1 reference

6 February 2019

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237452%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

author name string

Min Jin Kwon

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237452%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Thomas R Jørgensen

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237452%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Benjamin M Nitsche

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237452%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Mark Arentshorst

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237452%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Joohae Park

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237452%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Arthur F J Ram

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237452%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

language of work or name

English

0 references

publication date

13 December 2012

1 reference

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20 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237452%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

volume

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237452%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

page(s)

701

1 reference

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describes a project that uses

20 February 2020

limma

object named as

Limma

2 references

22 June 2022

https://europepmc.org/article/PMC/3554566

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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Structure of the catalytic domain of glucoamylase fromAspergillus niger

7 July 2018

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7 July 2018

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7 July 2018

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Transcriptomic comparison of Aspergillus niger growing on two different sugars reveals coordinated regulation of the secretory pathway

7 July 2018

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Aspergillus niger genome-wide analysis reveals a large number of novel alpha-glucan acting enzymes with unexpected expression profiles

7 July 2018

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7 July 2018

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Response to iron deprivation in Saccharomyces cerevisiae

7 July 2018

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Genomic analysis of the secretion stress response in the enzyme-producing cell factory Aspergillus niger

7 July 2018

1 reference

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Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88

7 July 2018

1 reference

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Calcium gradients and the Golgi.

7 July 2018

1 reference

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Centering, scaling, and transformations: improving the biological information content of metabolomics data

7 July 2018

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Linear models and empirical bayes methods for assessing differential expression in microarray experiments

7 July 2018

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Ca2+-regulated exocytosis and SNARE function

7 July 2018

1 reference

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The transcription factor HACA mediates the unfolded protein response in Aspergillus niger, and up-regulates its own transcription

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554566

Summaries of Affymetrix GeneChip probe level data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554566

Activation mechanisms of the HAC1-mediated unfolded protein response in filamentous fungi

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554566

XBP1 mRNA is induced by ATF6 and spliced by IRE1 in response to ER stress to produce a highly active transcription factor

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554566

A new mathematical model for relative quantification in real-time RT-PCR

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554566

Surfing the Sec61 channel: bidirectional protein translocation across the ER membrane.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554566

Stress signaling from the lumen of the endoplasmic reticulum: coordination of gene transcriptional and translational controls

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554566

The ER chaperone encoding bipA gene of black Aspergilli is induced by heat shock and unfolded proteins

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554566

Solution structure of the granular starch binding domain of glucoamylase from Aspergillus niger by nuclear magnetic resonance spectroscopy

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554566

Genetic analysis and the construction of master strains for assignment of genes to six linkage groups in Aspergillus niger

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554566

Quantitative iTRAQ secretome analysis of Aspergillus niger reveals novel hydrolytic enzymes

7 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-701

Glucoamylase overexpression in Aspergillus niger: molecular genetic analysis of strains containing multiple copies of the glaA gene

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-701

The effects of drugs inhibiting protein secretion in the filamentous fungus Trichoderma reesei. Evidence for down-regulation of genes that encode secreted proteins in the stressed cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-701

Genomic analysis of the unfolded protein response in Arabidopsis shows its connection to important cellular processes

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-701

Zinc-dependent dimerization of the folding catalyst, protein disulfide isomerase

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-701

Methods for investigating the UPR in filamentous fungi.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554566

Database mining and transcriptional analysis of genes encoding inulin-modifying enzymes of Aspergillus niger

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554566

Highly efficient gene targeting in the Aspergillus niger kusA mutant

27 October 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-701

Analysis of the role of the gene bipA, encoding the major endoplasmic reticulum chaperone protein in the secretion of homologous and heterologous proteins in black Aspergilli

21 January 2018

1 reference

12 December 2020

Cross-species microarray hybridization to identify developmentally regulated genes in the filamentous fungus Sordaria macrospora

1 reference

12 December 2020

Regulation of the amylolytic and (hemi-)cellulolytic genes in aspergilli

1 reference

12 December 2020

Isolation and characterisation of a calnexin homologue, clxA, from Aspergillus niger

1 reference

12 December 2020

Evaluation of molecular and genetic approaches to generate glucoamylase overproducing strains of Aspergillus niger

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2164-13-701

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237452%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237452%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

PubMed publication ID

23237452

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23237452%20AND%20SRC:MED&resulttype=core&format=json