Multiplexed protein-DNA cross-linking: Scrunching in transcription start site selection (Q34516872)

26941320

2 August 2017

title

Multiplexed protein-DNA cross-linking: Scrunching in transcription start site selection (English)

1 reference

2 August 2017

9

1 reference

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31 May 2020

author name string

Jared T Winkelman

1

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31 May 2020

Irina O Vvedenskaya

2

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31 May 2020

Yuanchao Zhang

3

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31 May 2020

Yu Zhang

4

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31 May 2020

Jeremy G Bird

5

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31 May 2020

Deanne M Taylor

6

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31 May 2020

Richard L Gourse

7

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31 May 2020

Richard H Ebright

8

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31 May 2020

language of work or name

English

0 references

publication date

1 March 2016

1 reference

2 August 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26941320%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

volume

351

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31 May 2020

issue

6277

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31 May 2020

page(s)

1090-1093

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Massively Systematic Transcript End Readout, "MASTER": Transcription Start Site Selection, Transcriptional Slippage, and Transcript Yields.

31 May 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4797950

Real-time observation of the initiation of RNA polymerase II transcription

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4797950

Crosslink Mapping at Amino Acid-Base Resolution Reveals the Path of Scrunched DNA in Initial Transcribing Complexes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4797950

Initial events in bacterial transcription initiation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4797950

The transcription bubble of the RNA polymerase-promoter open complex exhibits conformational heterogeneity and millisecond-scale dynamics: implications for transcription start-site selection

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4797950

Structural basis of transcription initiation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4797950

Fine structure of the promoter-sigma region 1.2 interaction

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4797950

Initial transcription by RNA polymerase proceeds through a DNA-scrunching mechanism

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4797950

Abortive initiation and productive initiation by RNA polymerase involve DNA scrunching

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4797950

A basal promoter element recognized by free RNA polymerase sigma subunit determines promoter recognition by RNA polymerase holoenzyme.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4797950

Factors affecting start site selection at the Escherichia coli fis promoter

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4797950

Addition of a photocrosslinking amino acid to the genetic code of Escherichiacoli

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4797950

Start site selection at lacUV5 promoter affected by the sequence context around the initiation sites

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4797950

Effects of transcriptional start site sequence and position on nucleotide-sensitive selection of alternative start sites at the pyrC promoter in Escherichia coli

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4797950

Promoter sequence for stringent control of bacterial ribonucleic acid synthesis.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4797950

Axiom of determining transcription start points by RNA polymerase in Escherichia coli

7 July 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAD6881

rRNA promoter regulation by nonoptimal binding of sigma region 1.2: an additional recognition element for RNA polymerase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAD6881

Processing of X-ray diffraction data collected in oscillation mode

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAD6881

MOLREP: an Automated Program for Molecular Replacement

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAD6881

Features and development of Coot

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAD6881

PHENIX: a comprehensive Python-based system for macromolecular structure solution

21 January 2018

1 reference

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WebLogo: A Sequence Logo Generator

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAD6881

Crystal structures of the E. coli transcription initiation complexes with a complete bubble

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAD6881

21 January 2018

Identifiers

DOI

10.1126/SCIENCE.AAD6881

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26941320%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26941320%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

26941320

1 reference