Structural basis of transcription activation (Q34530378)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27284196%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

title

Structural basis of transcription activation (English)

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13 March 2020

2

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13 March 2020

author name string

Yu Feng

series ordinal

1

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27284196%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

Richard H Ebright

series ordinal

3

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13 March 2020

language of work or name

English

0 references

publication date

1 June 2016

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13 March 2020

number of pages

4

1 reference

based on heuristic

inferred from page(s)

published in

Science

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13 March 2020

volume

352

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13 March 2020

issue

6291

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13 March 2020

page(s)

1330-1333

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27284196%20AND%20SRC:MED&resulttype=core&format=json

Free RNA polymerase in Escherichia coli

13 March 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4905602

CarD uses a minor groove wedge mechanism to stabilize the RNA polymerase open promoter complex.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4905602

Structure of a bacterial RNA polymerase holoenzyme open promoter complex

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4905602

Crystal structures of the E. coli transcription initiation complexes with a complete bubble

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4905602

Transcription regulation at the core: similarities among bacterial, archaeal, and eukaryotic RNA polymerases

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4905602

Structural basis of transcription initiation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4905602

X-ray crystal structure of TTHB099, a CRP/FNR superfamily transcriptional regulator from Thermus thermophilus HB8, reveals a DNA-binding protein with no required allosteric effector molecule

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4905602

Protein-protein interactions between sigma(70) region 4 of RNA polymerase and Escherichia coli SoxS, a transcription activator that functions by the prerecruitment mechanism: evidence for "off-DNA" and "on-DNA" interactions.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4905602

Three-dimensional EM structure of an intact activator-dependent transcription initiation complex

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4905602

Catabolite activator protein: DNA binding and transcription activation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4905602

Mechanism for a transcriptional activator that works at the isomerization step

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4905602

Interactions between activating region 3 of the Escherichia coli cyclic AMP receptor protein and region 4 of the RNA polymerase sigma(70) subunit: application of suppression genetics.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4905602

Transcription activation by catabolite activator protein (CAP)

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4905602

Identification of a contact site for different transcription activators in region 4 of the Escherichia coli RNA polymerase sigma70 subunit

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4905602

Transcriptional activation by recruitment

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4905602

Transcription activation at class II CRP-dependent promoters: the role of different activating regions

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4905602

Transcription activation at class II CAP-dependent promoters: two interactions between CAP and RNA polymerase

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4905602

Sigma domain structure: one down, one to go.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4905602

Crystal structure of a CAP-DNA complex: the DNA is bent by 90 degrees

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4905602

Activation and repression of transcription by differential contact: two sides of a coin.

7 July 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAF4417

Site-specific incorporation of fluorescent probes into protein: hexahistidine-tag-mediated fluorescent labeling with (Ni(2+):nitrilotriacetic Acid (n)-fluorochrome conjugates

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAF4417

Fluorescence resonance energy transfer (FRET) in analysis of transcription-complex structure and function.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAF4417

Response of RNA polymerase to ppGpp: requirement for the omega subunit and relief of this requirement by DksA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAF4417

Location, structure, and function of the target of a transcriptional activator protein.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAF4417

Tethering of the large subunits of Escherichia coli RNA polymerase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAF4417

Inhibition of bacterial RNA polymerase by streptolydigin: stabilization of a straight-bridge-helix active-center conformation

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAF4417

Involvement of CarA/LitR and CRP/FNR family transcriptional regulators in light-induced carotenoid production in Thermus thermophilus

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAF4417

Stringent spacing requirements for transcription activation by CRP.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAF4417

Aromatic amino acids in region 2.3 of Escherichia coli sigma 70 participate collectively in the formation of an RNA polymerase-promoter open complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAF4417

Thermus thermophilus 16S rRNA is transcribed from an isolated transcription unit

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAF4417

Nucleotide sequence changes produced by mutations in the lac promoter of Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAF4417

A third recognition element in bacterial promoters: DNA binding by the alpha subunit of RNA polymerase

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAF4417

The RNA polymerase "switch region" is a target for inhibitors

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAF4417

Location of the C-terminal domain of the RNA polymerase alpha subunit in different open complexes at the Escherichia coli galactose operon regulatory region

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAF4417

Fluorescence anisotropy: rapid, quantitative assay for protein-DNA and protein-protein interaction.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAF4417

Functional interaction between RNA polymerase alpha subunit C-terminal domain and sigma70 in UP-element- and activator-dependent transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAF4417

Rate-limiting steps in RNA chain initiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAF4417

Kinetic analysis of RNA polymerase-promoter interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAF4417

Processing of X-ray diffraction data collected in oscillation mode

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAF4417

The CCP4 suite: programs for protein crystallography

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAF4417

Features and development of Coot

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAF4417

PHENIX: a comprehensive Python-based system for macromolecular structure solution

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAF4417

Molecular cloning and nucleotide sequencing of the gene for E. coli cAMP receptor protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAF4417

Cloning and sequence of the crp gene of Escherichia coli K 12.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAF4417

Structure of the bacterial RNA polymerase promoter specificity sigma subunit

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAF4417

Structural basis for transcription elongation by bacterial RNA polymerase

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAF4417

Structure of the CAP-DNA complex at 2.5 angstroms resolution: a complete picture of the protein-DNA interface

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAF4417

X-ray Crystal Structure of Escherichia coli RNA Polymerase 70 Holoenzyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAF4417

Phage T7 Gp2 inhibition of Escherichia coli RNA polymerase involves misappropriation of 70 domain 1.1

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAF4417

Transcription inhibition by the depsipeptide antibiotic salinamide A

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAF4417

Structural organization of the RNA polymerase-promoter open complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAF4417

21 January 2018

Identifiers

DOI

10.1126/SCIENCE.AAF4417

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27284196%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27284196%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

1 reference