Genome-wide association study using whole-genome sequencing rapidly identifies new genes influencing agronomic traits in rice. (Q34531401)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27322545%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

title

Genome-wide association study using whole-genome sequencing rapidly identifies new genes influencing agronomic traits in rice (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27322545%20AND%20SRC:MED&resulttype=core&format=json

genome-wide association study

14 March 2020

main subject

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agronomic trait

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inferred from title

whole genome sequencing

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1

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14 March 2020

Masanori Yamasaki

7

1 reference

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14 March 2020

11

Makoto Matsuoka

1 reference

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14 March 2020

author name string

Eiji Yamamoto

2

1 reference

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14 March 2020

Koichiro Aya

3

1 reference

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14 March 2020

Hideyuki Takeuchi

4

1 reference

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14 March 2020

Pei-Ching Lo

5

1 reference

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14 March 2020

Li Hu

6

1 reference

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14 March 2020

Shinya Yoshida

8

1 reference

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14 March 2020

Hidemi Kitano

9

1 reference

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14 March 2020

Ko Hirano

10

1 reference

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14 March 2020

language of work or name

English

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publication date

20 June 2016

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14 March 2020

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14 March 2020

volume

48

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14 March 2020

issue

8

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14 March 2020

page(s)

927-934

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describes a project that uses

14 March 2020

genome-wide association study

1 reference

An SNP caused loss of seed shattering during rice domestication

inferred from title

cites work

1 reference

12 December 2020

A map of rice genome variation reveals the origin of cultivated rice

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Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines.

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Multiple introgression events surrounding the Hd1 flowering-time gene in cultivated rice, Oryza sativa L

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Green revolution: a mutant gibberellin-synthesis gene in rice

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OsSPL13 controls grain size in cultivated rice

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Principal components analysis corrects for stratification in genome-wide association studies

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Hd1, a major photoperiod sensitivity quantitative trait locus in rice, is closely related to the Arabidopsis flowering time gene CONSTANS.

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A high-efficiency Agrobacterium-mediated transformation system of rice (Oryza sativa L.).

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Genome-wide association studies of 14 agronomic traits in rice landraces.

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Genomic analysis of hybrid rice varieties reveals numerous superior alleles that contribute to heterosis

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Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm.

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Resequencing rice genomes: an emerging new era of rice genomics

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An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations.

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NAL1 allele from a rice landrace greatly increases yield in modern indica cultivars

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A coastal cline in sodium accumulation in Arabidopsis thaliana is driven by natural variation of the sodium transporter AtHKT1;1.

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Biological insights from 108 schizophrenia-associated genetic loci

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Generation of signaling specificity in Arabidopsis by spatially restricted buffering of ligand-receptor interactions

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Association mapping: critical considerations shift from genotyping to experimental design

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Uridylation of miRNAs by hen1 suppressor1 in Arabidopsis.

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A genome-wide screening and SNPs-to-genes approach to identify novel genetic risk factors associated with frontotemporal dementia

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Estimation of significance thresholds for genomewide association scans

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MEGA6: Molecular Evolutionary Genetics Analysis version 6.0

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Artificial selection for a green revolution gene during japonica rice domestication

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Cloning of quantitative trait genes from rice reveals conservation and divergence of photoperiod flowering pathways in Arabidopsis and rice

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Population genetics of genomics-based crop improvement methods

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From association to prediction: statistical methods for the dissection and selection of complex traits in plants.

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12 December 2020

A natural variant of NAL1, selected in high-yield rice breeding programs, pleiotropically increases photosynthesis rate

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12 December 2020

Hd6, a rice quantitative trait locus involved in photoperiod sensitivity, encodes the alpha subunit of protein kinase CK2.

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Food security: the challenge of feeding 9 billion people

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From mutations to MAGIC: resources for gene discovery, validation and delivery in crop plants.

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The nature of confounding in genome-wide association studies

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Fast and accurate long-read alignment with Burrows-Wheeler transform

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Genome-wide association study of quantitative resistance to southern leaf blight in the maize nested association mapping population

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12 December 2020

No association between ovarian cancer susceptibility variants and breast cancer risk among Chinese women

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12 December 2020

Whole genome re-sequencing of date palms yields insights into diversification of a fruit tree crop

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12 December 2020

Heading date 1 (Hd1), an ortholog of Arabidopsis CONSTANS, is a possible target of human selection during domestication to diversify flowering times of cultivated rice

1 reference

12 December 2020

Identification of genetic loci associated with Helicobacter pylori serologic status.

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12 December 2020

Natural variations and genome-wide association studies in crop plants

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12 December 2020

Copy number variation at the GL7 locus contributes to grain size diversity in rice

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12 December 2020

The map-based sequence of the rice genome

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12 December 2020

A framework for variation discovery and genotyping using next-generation DNA sequencing data

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12 December 2020

Genetic linkage analysis in the age of whole-genome sequencing

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MAGIC maize: a new resource for plant genetics

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The role of QTLs in the breeding of high-yielding rice

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Linkage disequilibrium and association studies in higher plants: present status and future prospects.

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12 December 2020

Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa

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12 December 2020

Natural variation in OsPRR37 regulates heading date and contributes to rice cultivation at a wide range of latitudes.

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12 December 2020

Whole-genome sequencing reveals untapped genetic potential in Africa's indigenous cereal crop sorghum

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12 December 2020

A unified mixed-model method for association mapping that accounts for multiple levels of relatedness

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12 December 2020

Genome-wide association study of leaf architecture in the maize nested association mapping population

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12 December 2020

Linkage disequilibrium in the human genome

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12 December 2020

Genetic design and statistical power of nested association mapping in maize

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12 December 2020

Rare variants create synthetic genome-wide associations

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12 December 2020

Exploring genetic variation in the tomato (Solanum section Lycopersicon) clade by whole-genome sequencing

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12 December 2020

A haplotype map of genomic variations and genome-wide association studies of agronomic traits in foxtail millet (Setaria italica)

1 reference

12 December 2020

Conditions under which genome-wide association studies will be positively misleading.

1 reference

12 December 2020

Natural variation in GS5 plays an important role in regulating grain size and yield in rice

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12 December 2020

Genetic diversity and phylogeny of Japanese sake-brewing rice as revealed by AFLP and nuclear and chloroplast SSR markers

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12 December 2020

The TIGR Rice Genome Annotation Resource: improvements and new features

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12 December 2020

Genome-wide association study dissects the genetic architecture of oil biosynthesis in maize kernels

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12 December 2020

Resequencing 302 wild and cultivated accessions identifies genes related to domestication and improvement in soybean.

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12 December 2020

HEN1 functions pleiotropically in Arabidopsis development and acts in C function in the flower.

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12 December 2020

Genomic analyses provide insights into the history of tomato breeding

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12 December 2020

Genetic properties of the MAGIC maize population: a new platform for high definition QTL mapping in Zea mays

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12 December 2020

Genetic properties of the maize nested association mapping population

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12 December 2020

Longevity GWAS Using the Drosophila Genetic Reference Panel

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12 December 2020

The next-generation sequencing revolution and its impact on genomics

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12 December 2020

The chicken RaxL gene plays a role in the initiation of photoreceptor differentiation

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Crossref

https://api.crossref.org/works/10.1038%2FNG.3596

7 January 2021

inferred from DOI database lookup

Corrigendum to "Assessment of common variability and expression quantitative trait loci for genome-wide associations for progressive supranuclear palsy." [Neurobiol. Aging 35 (2014) 1514.e1-1514.e12].

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNG.3596

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1038/NG.3596

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27322545%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

1 reference