RADIA: RNA and DNA integrated analysis for somatic mutation detection (Q34535183)

2 August 2017

RADIA: RNA and DNA integrated analysis for somatic mutation detection (English)

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2 August 2017

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3

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2 August 2017

7

David Haussler

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Eric Collisson

5

object named as

Eric A Collisson

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2 August 2017

Amie J Radenbaugh

1

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2 August 2017

Singer Ma

2

1 reference

2 August 2017

Joshua M Stuart

4

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2 August 2017

Jingchun Zhu

6

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2 August 2017

language of work or name

English

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publication date

18 November 2014

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2 August 2017

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2 August 2017

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2 August 2017

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2 August 2017

e111516

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Creative Commons Attribution 4.0 International

2 August 2017

start time

18 November 2014

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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7 July 2018

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7 July 2018

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7 July 2018

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Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples

7 July 2018

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p53 mutations in cancer

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ENCODE data in the UCSC Genome Browser: year 5 update

7 July 2018

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7 July 2018

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Pancreatic cancer genomes reveal aberrations in axon guidance pathway genes

7 July 2018

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Comprehensive molecular portraits of human breast tumours

7 July 2018

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Mapping the hallmarks of lung adenocarcinoma with massively parallel sequencing

7 July 2018

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GENCODE: the reference human genome annotation for The ENCODE Project

7 July 2018

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Comprehensive molecular characterization of human colon and rectal cancer

7 July 2018

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A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3

7 July 2018

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Expressed pseudogenes in the transcriptional landscape of human cancers

7 July 2018

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Novel mutations target distinct subgroups of medulloblastoma.

7 July 2018

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Strelka: accurate somatic small-variant calling from sequenced tumor-normal sample pairs

7 July 2018

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Prognostic and predictive value of TP53 mutations in node-positive breast cancer patients treated with anthracycline- or anthracycline/taxane-based adjuvant therapy: results from the BIG 02-98 phase III trial

7 July 2018

1 reference

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Exome versus transcriptome sequencing in identifying coding region variants

7 July 2018

1 reference

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VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing

7 July 2018

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SomaticSniper: identification of somatic point mutations in whole genome sequencing data

7 July 2018

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Frequent mutations of chromatin remodeling genes in transitional cell carcinoma of the bladder

7 July 2018

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Improving SNP discovery by base alignment quality

7 July 2018

1 reference

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A map of human genome variation from population-scale sequencing

7 July 2018

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Frequent mutations of chromatin remodeling gene ARID1A in ovarian clear cell carcinoma

7 July 2018

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MapSplice: accurate mapping of RNA-seq reads for splice junction discovery.

7 July 2018

1 reference

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Diverse somatic mutation patterns and pathway alterations in human cancers

7 July 2018

1 reference

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Screening the human exome: a comparison of whole genome and whole transcriptome sequencing

7 July 2018

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7 July 2018

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Single nucleotide differences (SNDs) in the dbSNP database may lead to errors in genotyping and haplotyping studies

7 July 2018

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Mutant p53 (G199V) gains antiapoptotic function through signal transducer and activator of transcription 3 in anaplastic thyroid cancer cells

7 July 2018

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VarScan: variant detection in massively parallel sequencing of individual and pooled samples

7 July 2018

1 reference

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The Sequence Alignment/Map format and SAMtools

7 July 2018

1 reference

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Fast and accurate short read alignment with Burrows-Wheeler transform

7 July 2018

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The UCSC Cancer Genomics Browser

7 July 2018

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RNA-Seq: a revolutionary tool for transcriptomics

7 July 2018

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Retrocopy contributions to the evolution of the human genome

7 July 2018

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Genome wide SNP comparative analysis between EGFR and KRAS mutated NSCLC and characterization of two models of oncogenic cooperation in non-small cell lung carcinoma

7 July 2018

1 reference

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Somatic mutations of the protein kinase gene family in human lung cancer

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236012

A New Method for Determining the Status of p53 in Tumor Cell Lines of Different Origin

7 July 2018

1 reference

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The human genome browser at UCSC

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236012

BLAT—The BLAST-Like Alignment Tool

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236012

dbSNP: the NCBI database of genetic variation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236012

Functions and mechanisms of RNA editing

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236012

7 July 2018

The Hallmarks of Cancer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236012

Creation of human tumour cells with defined genetic elements

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236012

The p53 protein is an unusually shaped tetramer that binds directly to DNA.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236012

The mitochondrial and autosomal mutation landscapes of prostate cancer

7 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0111516

TP53 mutation is frequently associated with CTNNB1 mutation or MYCN amplification and is compatible with long-term survival in medulloblastoma.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0111516

p16INK4A inactivation mechanisms in non-small-cell lung cancer patients occupationally exposed to asbestos.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0111516

Frequent methylation of p16INK4A and p14ARF genes implicated in the evolution of chronic myeloid leukaemia from its chronic to accelerated phase

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0111516

Alterations of p16 and prognosis in biliary tract cancers from a population-based study in China.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0111516

Heterogeneity in the clinical phenotype of TP53 mutations in breast cancer patients

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236012

Alterations of the p16INK4a/p14ARF pathway in clear cell sarcoma

27 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25405470

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0111516

1 reference

2 August 2017

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1 reference

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2 August 2017

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