detectIR: a novel program for detecting perfect and imperfect inverted repeats using complex numbers and vector calculation (Q34542425)

2 August 2017

title

detectIR: a novel program for detecting perfect and imperfect inverted repeats using complex numbers and vector calculation (English)

1 reference

2 August 2017

Congting Ye

1

1 reference

2 August 2017

Guoli Ji

series ordinal

2

1 reference

2 August 2017

Lei Li

series ordinal

3

1 reference

2 August 2017

Chun Liang

series ordinal

4

1 reference

2 August 2017

language of work or name

English

0 references

publication date

19 November 2014

1 reference

2 August 2017

1 reference

2 August 2017

volume

9

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2 August 2017

issue

11

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2 August 2017

page(s)

e113349

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Creative Commons Attribution 4.0 International

2 August 2017

copyright license

start time

19 November 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

A MATLAB-based tool for accurate detection of perfect overlapping and nested inverted repeats in DNA sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4237412

Regulation of HFE expression by poly(ADP-ribose) polymerase-1 (PARP1) through an inverted repeat DNA sequence in the distal promoter

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4237412

Two replication fork maintenance pathways fuse inverted repeats to rearrange chromosomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4237412

MITE Digger, an efficient and accurate algorithm for genome wide discovery of miniature inverted repeat transposable elements

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4237412

Miniature inverted-repeat transposable elements (MITEs) have been accumulated through amplification bursts and play important roles in gene expression and species diversity in Oryza sativa

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4237412

Cruciform structures are a common DNA feature important for regulating biological processes.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4237412

The distribution of inverted repeat sequences in the Saccharomyces cerevisiae genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4237412

Meeting DNA palindromes head-to-head

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4237412

Replication stalling at unstable inverted repeats: interplay between DNA hairpins and fork stabilizing proteins

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4237412

Intronic binding sites for hnRNP A/B and hnRNP F/H proteins stimulate pre-mRNA splicing

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4237412

Regulation of Chromatin Structure and Gene Activity by Poly(ADP-Ribose) Polymerases

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4237412

High-affinity hnRNP A1 binding sites and duplex-forming inverted repeats have similar effects on 5' splice site selection in support of a common looping out and repression mechanism

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4237412

Construct design for efficient, effective and high-throughput gene silencing in plants.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4237412

EMBOSS: the European Molecular Biology Open Software Suite

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4237412

Intron self-complementarity enforces exon inclusion in a yeast pre-mRNA

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4237412

Inverted repeats, stem-loops, and cruciforms: significance for initiation of DNA replication

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4237412

Inverted DNA repeats: a source of eukaryotic genomic instability

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4237412

The inverted repeat as a recognizable structural feature in supercoiled DNA molecules

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4237412

DNA transitions induced by binding of PARP-1 to cruciform structures in supercoiled plasmids.

7 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0113349

DNA palindromes adopt a methylation-resistant conformation that is consistent with DNA cruciform or hairpin formation in vivo.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0113349

The human genome-wide distribution of DNA palindromes

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0113349

Comparative genome analysis suggests characteristics of yeast inverted repeats that are important for transcriptional activity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0113349

Gene silencing of the Lentinula edodes lcc1 gene by expression of a homologous inverted repeat sequence

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25409465

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Inverted repeats in the promoter as an autoregulatory sequence for TcrX in Mycobacterium tuberculosis

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25409465

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0113349

1 reference

2 August 2017

0 references

1 reference

2 August 2017

1 reference