InterPro in 2017-beyond protein family and domain annotations (Q34546171)

2 August 2017

InterPro in 2017-beyond protein family and domain annotations (English)

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Peer Bork

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Aron Marchler-Bauer

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Aron Marchler-Bauer

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Lorna Richardson

Lorna Richardson

32

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Damiano Piovesan

Damiano Piovesan

28

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Nicole Redaschi

Nicole Redaschi

31

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Alan J Bridge

Alan J Bridge

6

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Gemma L. Holliday

Gemma L Holliday

13

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Terri Attwood

Teresa K Attwood

2

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Sebastien Pesseat

Sebastien Pesseat

27

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Sara El-Gebali

Sara El-Gebali

9

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Catherine Rivoire

Catherine Rivoire

33

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Alex Mitchell

Alex L Mitchell

47

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Rodrigo López

17

Rodrigo Lopez

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3

Patricia C Babbitt

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2 August 2017

Simon C Potter

29

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Xiaosong Huang

Xiaosong Huang

15

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Ian Sillitoe

36

Ian Sillitoe

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2 August 2017

25

Christine A Orengo

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2 August 2017

Paul D Thomas

41

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Julian Gough

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Julian Gough

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2 August 2017

Christian J A Sigrist

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Christian Sigrist

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2 August 2017

Amaia Sangrador-Vegas

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Amaia Sangrador-Vegas

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Ioannis Xenarios

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2 August 2017

43

Cathy H Wu

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Darren A Natale

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1

Robert D Finn

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David Haft

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Hongzhan Huang

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Marco Necci

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Gift Nuka

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Neil D Rawlings

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Narmada Thanki

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Silvio C E Tosatto

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39

Granger Sutton

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2 August 2017

Hsin-Yu Chang

7

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2 August 2017

Zsuzsanna Dosztányi

8

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2 August 2017

Matthew Fraser

10

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2 August 2017

Shennan Lu

18

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2 August 2017

Huaiyu Mi

20

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2 August 2017

Youngmi Park

26

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2 August 2017

Ben Smithers

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Silvano Squizzato

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Lai-Su Yeh

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2 August 2017

Siew-Yit Young

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2 August 2017

language of work or name

English

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publication date

29 November 2016

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2 August 2017

Nucleic Acids Research

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2 August 2017

45

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2 August 2017

D190-D199

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2 August 2017

D1

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Creative Commons Attribution 4.0 International

2 August 2017

start time

30 November 2016

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

Large-scale analysis of intrinsic disorder flavors and associated functions in the protein sequence universe

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

The Ensembl gene annotation system

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

Candidate gene prioritization with Endeavour.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

GO annotation in InterPro: why stability does not indicate accuracy in a sea of changing annotations

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

The Pfam protein families database: towards a more sustainable future

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

EBI metagenomics in 2016--an expanding and evolving resource for the analysis and archiving of metagenomic data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

PANTHER version 10: expanded protein families and functions, and analysis tools.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

Gene3D: expanding the utility of domain assignments

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

Ensembl Genomes 2016: more genomes, more complexity

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

DIDA: A curated and annotated digenic diseases database.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

KEGG as a reference resource for gene and protein annotation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

PhytoPath: an integrative resource for plant pathogen genomics.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

PDBe: improved accessibility of macromolecular structure data from PDB and EMDB

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

Intrinsically disordered proteins in cellular signalling and regulation.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

The InterPro protein families database: the classification resource after 15 years

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

Expanded microbial genome coverage and improved protein family annotation in the COG database

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

CDD: NCBI's conserved domain database

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

The SUPERFAMILY 1.75 database in 2014: a doubling of data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

MobiDB 2.0: an improved database of intrinsically disordered and mobile proteins

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

CATH: comprehensive structural and functional annotations for genome sequences.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

UniProt: a hub for protein information

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

HAMAP in 2015: updates to the protein family classification and annotation system

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

SMART: recent updates, new developments and status in 2015.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

Classification of intrinsically disordered regions and proteins

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

InterProScan 5: genome-scale protein function classification

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

The Structure-Function Linkage Database

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

Calpain-6 deficiency promotes skeletal muscle development and regeneration

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

TIGRFAMs and Genome Properties in 2013.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

New and continuing developments at PROSITE.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

The PRINTS database: a fine-grained protein sequence annotation and analysis resource--its status in 2012

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

UniPathway: a resource for the exploration and annotation of metabolic pathways

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

The $1,000 genome, the $100,000 analysis?

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

From complete genome sequence to 'complete' understanding?

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

The National Center for Biotechnology Information's Protein Clusters Database

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

High-throughput functional annotation and data mining with the Blast2GO suite

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

Data growth and its impact on the SCOP database: new developments

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

The ProDom database of protein domain families: more emphasis on 3D

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

PIRSF: family classification system at the Protein Information Resource

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

Protein disorder prediction: implications for structural proteomics

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

GlobPlot: Exploring protein sequences for globularity and disorder

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

Gene ontology: tool for the unification of biology

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

The ENZYME database in 2000

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

ESpritz: accurate and fast prediction of protein disorder

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

The pairwise energy content estimated from amino acid composition discriminates between folded and intrinsically unstructured proteins.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210578

27 October 2018

Identifiers

DOI

10.1093/NAR/GKW1107

1 reference

journals/nar/FinnABBBBCDEFGH17

2 August 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

2 August 2017

1 reference