Orchidstra: an integrated orchid functional genomics database (Q34549838)

3 August 2017

title

Orchidstra: an integrated orchid functional genomics database (English)

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3 August 2017

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Ya-Ting Chao

2

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author name string

Chun-lin Su

1

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3 August 2017

Shao-Hua Yen

3

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3 August 2017

Chun-Yi Chen

4

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3 August 2017

Wan-Chieh Chen

5

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3 August 2017

Yao-Chien Alex Chang

6

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3 August 2017

Ming-Che Shih

7

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3 August 2017

publication date

16 January 2013

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Plant and Cell Physiology

3 August 2017

published in

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3 August 2017

volume

54

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3 August 2017

issue

2

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3 August 2017

page(s)

e11

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Gene Ontology annotations and resources

3 August 2017

cites work

1 reference

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7 July 2018

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7 July 2018

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7 July 2018

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Next-generation transcriptome assembly

7 July 2018

1 reference

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Characterization of Oncidium 'Gower Ramsey' transcriptomes using 454 GS-FLX pyrosequencing and their application to the identification of genes associated with flowering time

7 July 2018

1 reference

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De novo assembly of expressed transcripts and global analysis of the Phalaenopsis aphrodite transcriptome

7 July 2018

1 reference

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Whole-transcriptome RNAseq analysis from minute amount of total RNA.

7 July 2018

1 reference

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Reference-guided assembly of four diverse Arabidopsis thaliana genomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3583029

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

7 July 2018

1 reference

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A practical comparison of de novo genome assembly software tools for next-generation sequencing technologies

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3583029

OrchidBase: a collection of sequences of the transcriptome derived from orchids

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3583029

The Sol Genomics Network (solgenomics.net): growing tomatoes using Perl

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3583029

Optimization of de novo transcriptome assembly from next-generation sequencing data

7 July 2018

1 reference

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Sequencing technologies - the next generation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3583029

The Pfam protein families database

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3583029

Comparison of next generation sequencing technologies for transcriptome characterization

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3583029

Short-read sequencing technologies for transcriptional analyses.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3583029

Genome size diversity in orchids: consequences and evolution

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3583029

High-throughput functional annotation and data mining with the Blast2GO suite

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3583029

miRBase: tools for microRNA genomics

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3583029

CSRDB: a small RNA integrated database and browser resource for cereals

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3583029

The TIGR Rice Genome Annotation Resource: improvements and new features

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3583029

ASRP: the Arabidopsis Small RNA Project Database

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3583029

Life history evolution and genome size in subtribe Oncidiinae (Orchidaceae).

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3583029

The neighbor-joining method: a new method for reconstructing phylogenetic trees

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3583029

Basic local alignment search tool

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3583029

Whole-genome sequencing of multiple Arabidopsis thaliana populations.

7 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FPCP%2FPCT004

Using the KEGG database resource.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FPCP%2FPCT004

Confidence Limits on Phylogenies: an Approach using the Bootstrap

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23324169

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/PCP/PCT004

1 reference

3 August 2017

1 reference

3 August 2017

1 reference