The enhancer-blocking activity of the Fab-7 boundary from the Drosophila bithorax complex requires GAGA-factor-binding sites. (Q34569693)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15579691%20AND%20SRC:MED&resulttype=core&format=json

5 January 2020

title

The enhancer-blocking activity of the Fab-7 boundary from the Drosophila bithorax complex requires GAGA-factor-binding sites (English)

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5 January 2020

0 references

3

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5 January 2020

Rakesh Mishra

6

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5 January 2020

author name string

Susan Schweinsberg

1

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5 January 2020

Kirsten Hagstrom

2

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5 January 2020

Paul Schedl

4

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5 January 2020

Ram P Kumar

5

1 reference

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5 January 2020

Francois Karch

7

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5 January 2020

language of work or name

English

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publication date

1 November 2004

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5 January 2020

number of pages

14

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inferred from page(s)

published in

Genetics

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5 January 2020

volume

168

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5 January 2020

issue

3

1 reference

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5 January 2020

page(s)

1371-1384

1 reference

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H3 uridine incorporation in lampbrush chromosomes

5 January 2020

cites work

1 reference

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A novel boundary element may facilitate independent gene regulation in the Antennapedia complex of Drosophila

7 July 2018

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Genome-wide identification of in vivo Drosophila Engrailed-binding DNA fragments and related target genes.

7 July 2018

1 reference

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batman Interacts with polycomb and trithorax group genes and encodes a BTB/POZ protein that is included in a complex containing GAGA factor

7 July 2018

1 reference

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The Drosophila transcription factor tramtrack (TTK) interacts with Trithorax-like (GAGA) and represses GAGA-mediated activation

7 July 2018

1 reference

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GAGA factor and the TFIID complex collaborate in generating an open chromatin structure at the Drosophila melanogaster hsp26 promoter

7 July 2018

1 reference

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Insulators: many functions, many mechanisms.

7 July 2018

1 reference

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GAGA factor isoforms have distinct but overlapping functions in vivo

7 July 2018

1 reference

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Chromatin insulators and boundaries: effects on transcription and nuclear organization

7 July 2018

1 reference

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The GAGA factor of Drosophila interacts with SAP18, a Sin3-associated polypeptide

7 July 2018

1 reference

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The iab-7 polycomb response element maps to a nucleosome-free region of chromatin and requires both GAGA and pleiohomeotic for silencing activity

7 July 2018

1 reference

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Transcriptional silencing in fission yeast

7 July 2018

1 reference

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CTCF mediates methylation-sensitive enhancer-blocking activity at the H19/Igf2 locus

7 July 2018

1 reference

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Methylation of a CTCF-dependent boundary controls imprinted expression of the Igf2 gene

7 July 2018

1 reference

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Structure of a polycomb response element and in vitro binding of polycomb group complexes containing GAGA factor

7 July 2018

1 reference

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The Zw5 protein, a component of the scs chromatin domain boundary, is able to block enhancer-promoter interaction

7 July 2018

1 reference

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Domains and boundaries in chromosomes.

7 July 2018

1 reference

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Co-operative DNA binding by GAGA transcription factor requires the conserved BTB/POZ domain and reorganizes promoter topology

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448804

Dividing the empire: boundary chromatin elements delimit the territory of enhancers

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448804

Chromatin conformation of the H19 epigenetic mark

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448804

GAGA mediates the enhancer blocking activity of the eve promoter in the Drosophila embryo.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448804

Chromatin boundaries: punctuating the genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448804

Chromatin domain boundaries in the Bithorax complex

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448804

Dynamics of potentiation and activation: GAGA factor and its role in heat shock gene regulation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448804

A Polycomb and GAGA dependent silencer adjoins the Fab-7 boundary in the Drosophila bithorax complex

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448804

Co-localization of Polycomb protein and GAGA factor on regulatory elements responsible for the maintenance of homeotic gene expression

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448804

The solution structure of a specific GAGA factor-DNA complex reveals a modular binding mode

7 July 2018

1 reference

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The single Cys2-His2 zinc finger domain of the GAGA protein flanked by basic residues is sufficient for high-affinity specific DNA binding.

7 July 2018

1 reference

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(CT)n (GA)n repeats and heat shock elements have distinct roles in chromatin structure and transcriptional activation of the Drosophila hsp26 gene

7 July 2018

1 reference

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The bluetail transposon: evidence for independent cis-regulatory domains and domain boundaries in the bithorax complex.

7 July 2018

1 reference

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Multiple proteins interact with the fushi tarazu proximal enhancer

7 July 2018

1 reference

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ATP-dependent nucleosome disruption at a heat-shock promoter mediated by binding of GAGA transcription factor.

7 July 2018

1 reference

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Mcp and Fab-7: molecular analysis of putative boundaries of cis-regulatory domains in the bithorax complex of Drosophila melanogaster

7 July 2018

1 reference

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Enhancer point mutation results in a homeotic transformation in Drosophila

7 July 2018

1 reference

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The Drosophila GAGA transcription factor is associated with specific regions of heterochromatin throughout the cell cycle

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448804

Chromatin remodeling by GAGA factor and heat shock factor at the hypersensitive Drosophila hsp26 promoter in vitro.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448804

Isolation of cDNAs encoding the Drosophila GAGA transcription factor

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448804

The abdominal region of the bithorax complex

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448804

Genetic organization of Drosophila bithorax complex.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448804

Trans-regulatory functions in the Abdominal-B gene of the bithorax complex

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448804

In vitro transcription of the Drosophila engrailed gene

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448804

7 July 2018

1 reference

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The 87A7 chromomere. Identification of novel chromatin structures flanking the heat shock locus that may define the boundaries of higher order domains

7 July 2018

1 reference

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Transcription factors that activate the Ultrabithorax promoter in developmentally staged extracts

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448804

P-element-mediated enhancer detection: a versatile method to study development in Drosophila.

7 July 2018

1 reference

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The molecular genetics of the bithorax complex of Drosophila: cis-regulation in the Abdominal-B domain

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448804

Sequence-specific transcriptional antirepression of the Drosophila Krüppel gene by the GAGA factor

7 July 2018

1 reference

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A new homeotic mutation in the Drosophila bithorax complex removes a boundary separating two domains of regulation

7 July 2018

1 reference

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The bx region enhancer, a distant cis-control element of the Drosophila Ubx gene and its regulation by hunchback and other segmentation genes

7 July 2018

1 reference

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Repression of hsp70 heat shock gene transcription by the suppressor of hairy-wing protein of Drosophila melanogaster

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448804

A position-effect assay for boundaries of higher order chromosomal domains

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448804

Control of the expression of the bithorax complex genes abdominal-A and abdominal-B by cis-regulatory regions in Drosophila embryos

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448804

A group of scs elements function as domain boundaries in an enhancer-blocking assay

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448804

Sharp anterior boundary of homeotic gene expression conferred by the fushi tarazu protein

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448804

DNA position-specific repression of transcription by a Drosophila zinc finger protein

7 July 2018

1 reference

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Intragenic deletions and salivary band relationships in Drosophila

7 July 2018

1 reference

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A gene complex controlling segmentation in Drosophila

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448804

Developmental modulation of Fab-7 boundary function.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448804

Trl-GAGA directly interacts with lola like and both are part of the repressive complex of Polycomb group of genes

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448804

The BTB/POZ domain of the regulatory proteins Bric à brac 1 (BAB1) and Bric à brac 2 (BAB2) interacts with the novel Drosophila TAF(II) factor BIP2/dTAF(II)155.

27 October 2018

1 reference

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The Fab-8 boundary defines the distal limit of the bithorax complex iab-7 domain and insulates iab-7 from initiation elements and a PRE in the adjacent iab-8 domain.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448804

In situ dissection of the Fab-7 region of the bithorax complex into a chromatin domain boundary and a Polycomb-response element.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448804

Fab-7 functions as a chromatin domain boundary to ensure proper segment specification by the Drosophila bithorax complex.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448804

The Fab-7 element of the bithorax complex attenuates enhancer-promoter interactions in the Drosophila embryo.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448804

The Drosophila pipsqueak gene encodes a nuclear BTB-domain-containing protein required early in oogenesis.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448804

The GAGA factor is required in the early Drosophila embryo not only for transcriptional regulation but also for nuclear division

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448804

Purification and properties of an ATP-dependent nucleosome remodeling factor.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448804

The Trithorax-like gene encodes the Drosophila GAGA factor.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448804

DNA distortion and multimerization: novel functions of the glutamine-rich domain of GAGA factor

27 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15579691

12 December 2020

inferred from PubMed ID database lookup

On the submicroscopic structure of chromosomes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15579691

12 December 2020

inferred from PubMed ID database lookup

Functional mapping of the GAGA factor assigns its transcriptional activity to the C-terminal glutamine-rich domain

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15579691

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1534/GENETICS.104.029561

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15579691%20AND%20SRC:MED&resulttype=core&format=json

5 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15579691%20AND%20SRC:MED&resulttype=core&format=json

5 January 2020

PubMed publication ID

15579691

1 reference