Biologically inspired phylogenetic models strongly outperform the no common mechanism model. (Q34571317)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21252385%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

title

Biologically inspired phylogenetic models strongly outperform the no common mechanism model (English)

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20 January 2020

1 reference

2

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20 January 2020

3

Marc A Suchard

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20 January 2020

author name string

John P Huelsenbeck

series ordinal

1

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20 January 2020

publication date

20 January 2011

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20 January 2020

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20 January 2020

volume

60

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20 January 2020

issue

2

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20 January 2020

page(s)

225-232

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Relaxed phylogenetics and dating with confidence

20 January 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038349

Phylogenetic relationships and evolutionary history of the reef fish family Labridae

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038349

Are you my mother? Bayesian phylogenetic inference of recombination among putative parental strains.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038349

Inference of population structure using multilocus genotype data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038349

Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038349

Links between maximum likelihood and maximum parsimony under a simple model of site substitution

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038349

Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038349

Disparate rates of molecular evolution in cospeciating hosts and parasites

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038349

Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038349

Sampling properties of DNA sequence data in phylogenetic analysis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038349

A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038349

Evolutionary trees from DNA sequences: A maximum likelihood approach

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038349

Dating of the human-ape splitting by a molecular clock of mitochondrial DNA

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038349

The akaike information criterion will not choose the no common mechanism model.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038349

Penalized likelihood phylogenetic inference: bridging the parsimony-likelihood gap.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038349

A Bayesian perspective on a non-parsimonious parsimony model

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038349

Experimental design criteria in phylogenetics: where to add taxa

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038349

Oh brother, where art thou? A Bayes factor test for recombination with uncertain heritage.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038349

27 October 2018

Identifiers

DOI

10.1093/SYSBIO/SYQ089

1 reference

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20 January 2020

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20 January 2020

PubMed publication ID

21252385

1 reference