Protein domain analysis in the era of complete genomes (Q34575928)

3 August 2017

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title

Protein domain analysis in the era of complete genomes (English)

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3 August 2017

3

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3 August 2017

4

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3 August 2017

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Tobias Doerks

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3 August 2017

1

Richard R Copley

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PubMed ID

11911892

3 August 2017

language of work or name

English

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publication date

1 February 2002

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3 August 2017

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3 August 2017

513

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3 August 2017

1

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3 August 2017

129-134

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One thousand families for the molecular biologist

3 August 2017

1 reference

https://api.crossref.org/works/10.1016%2FS0014-5793%2801%2903289-6

Estimating the number of protein folds and families from complete genome data

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0014-5793%2801%2903289-6

Domains in proteins: definitions, location, and structural principles

21 January 2018

2 references

https://api.crossref.org/works/10.1016%2FS0014-5793%2801%2903289-6

21 January 2018

https://api.crossref.org/works/10.1016%2FS0014-5793%2801%2903289-6

inferred from DOI database lookup

7 January 2021

based on heuristic

Protein repeats: structures, functions, and evolution

1 reference

https://api.crossref.org/works/10.1016%2FS0014-5793%2801%2903289-6

On the evolution of protein folds: are similar motifs in different protein folds the result of convergence, insertion, or relics of an ancient peptide world?

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0014-5793%2801%2903289-6

Selfish DNA in Protein-Coding Genes of Rickettsia

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0014-5793%2801%2903289-6

Annotation transfer for genomics: measuring functional divergence in multi-domain proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0014-5793%2801%2903289-6

Initial sequencing and analysis of the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0014-5793%2801%2903289-6

Evolution of domain families

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0014-5793%2801%2903289-6

Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0014-5793%2801%2903289-6

Limits of homology detection by pairwise sequence comparison.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0014-5793%2801%2903289-6

Modular arrangement of proteins as inferred from analysis of homology.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0014-5793%2801%2903289-6

DIVCLUS: an automatic method in the GEANFAMMER package that finds homologous domains in single- and multi-domain proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0014-5793%2801%2903289-6

Domain identification by clustering sequence alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0014-5793%2801%2903289-6

GeneRAGE: a robust algorithm for sequence clustering and domain detection.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0014-5793%2801%2903289-6

Picasso: generating a covering set of protein family profiles.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0014-5793%2801%2903289-6

SMART: a web-based tool for the study of genetically mobile domains

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0014-5793%2801%2903289-6

The Pfam protein families database.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0014-5793%2801%2903289-6

The InterPro database, an integrated documentation resource for protein families, domains and functional sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0014-5793%2801%2903289-6

ProDom and ProDom-CG: tools for protein domain analysis and whole genome comparisons

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0014-5793%2801%2903289-6

Conservation and novelty in the evolution of cell adhesion and extracellular matrix genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0014-5793%2801%2903289-6

Completeness in structural genomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0014-5793%2801%2903289-6

SCOP: a structural classification of proteins database

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0014-5793%2801%2903289-6

Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0014-5793%2801%2903289-6

Structure of the ERM protein moesin reveals the FERM domain fold masked by an extended actin binding tail domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0014-5793%2801%2903289-6

Three-dimensional structure of the tyrosine kinase c-Src

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0014-5793%2801%2903289-6

Crystal structure of an ephrin ectodomain

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0014-5793%2801%2903289-6

IL-17s adopt a cystine knot fold: structure and activity of a novel cytokine, IL-17F, and implications for receptor binding

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0014-5793%2801%2903289-6

Crystal structure and mutational analysis of a perlecan-binding fragment of nidogen-1

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0014-5793%2801%2903289-6

KH domain: one motif, two folds

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0014-5793%2801%2903289-6

Fold change in evolution of protein structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0014-5793%2801%2903289-6

Novel domains in NADPH oxidase subunits, sorting nexins, and PtdIns 3-kinases: binding partners of SH3 domains?

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0014-5793%2801%2903289-6

The double life of PX domains

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0014-5793%2801%2903289-6

Analysis and prediction of functional sub-types from protein sequence alignments.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0014-5793%2801%2903289-6

An evolutionary trace method defines binding surfaces common to protein families

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0014-5793%2801%2903289-6

Automated structure-based prediction of functional sites in proteins: applications to assessing the validity of inheriting protein function from homology in genome annotation and to protein docking.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0014-5793%2801%2903289-6

A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0014-5793%2801%2903289-6

A comprehensive two-hybrid analysis to explore the yeast protein interactome

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0014-5793%2801%2903289-6

Novel protein domains and repeats in Drosophila melanogaster: insights into structure, function, and evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0014-5793%2801%2903289-6

Accurate formula for P-values of gapped local sequence and profile alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0014-5793%2801%2903289-6

10.1016/S0014-5793(01)03289-6

21 January 2018

Identifiers

DOI

1 reference

3 August 2017

1 reference

PubMed ID

11911892