Synergistic modulation of cyclobutane pyrimidine dimer photoproduct formation and deamination at a TmCG site over a full helical DNA turn in a nucleosome core particle. (Q34579704)

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English	Synergistic modulation of cyclobutane pyrimidine dimer photoproduct formation and deamination at a TmCG site over a full helical DNA turn in a nucleosome core particle.	scientific article

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22 February 2020

Synergistic modulation of cyclobutane pyrimidine dimer photoproduct formation and deamination at a TmCG site over a full helical DNA turn in a nucleosome core particle (English)

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22 February 2020

John-Stephen Taylor

3

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22 February 2020

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Qian Song

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22 February 2020

Vincent J Cannistraro

2

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22 February 2020

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11 November 2014

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22 February 2020

Nucleic Acids Research

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22 February 2020

42

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22 February 2020

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22 February 2020

13122-13133

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22 February 2020

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3 May 2017

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April 2022 Public Data File from Crossref

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0 references

Abasic and oxidized abasic site reactivity in DNA: enzyme inhibition, cross-linking, and nucleosome catalyzed reactions

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7 July 2018

Base pair opening in a deoxynucleotide duplex containing a cis-syn thymine cyclobutane dimer lesion.

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7 July 2018

H1 histones: current perspectives and challenges

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7 July 2018

Solar-UV-signature mutation prefers TCG to CCG: extrapolative consideration from UVA1-induced mutation spectra in mouse skin

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7 July 2018

Controls of nucleosome positioning in the human genome.

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7 July 2018

The mechanics behind DNA sequence-dependent properties of the nucleosome

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7 July 2018

Preparation of site-specific T=mCG cis-syn cyclobutane dimer-containing template and its error-free bypass by yeast and human polymerase η

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7 July 2018

Crystal structures of an archaeal class II DNA photolyase and its complex with UV-damaged duplex DNA

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7 July 2018

The mechanisms of UV mutagenesis

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7 July 2018

Rotational position of a 5-methylcytosine-containing cyclobutane pyrimidine dimer in a nucleosome greatly affects its deamination rate.

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7 July 2018

Kinetics of deamination and Cu(II)/H2O2/Ascorbate-induced formation of 5-methylcytosine glycol at CpG sites in duplex DNA.

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7 July 2018

Acceleration of 5-methylcytosine deamination in cyclobutane dimers by G and its implications for UV-induced C-to-T mutation hotspots

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7 July 2018

Predicting thymine dimerization yields from molecular dynamics simulations

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7 July 2018

Cisplatin damage overrides the predefined rotational setting of positioned nucleosomes

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7 July 2018

Thymine dimerization in DNA is an ultrafast photoreaction

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7 July 2018

Dynamic nucleosomes

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4245940

7 July 2018

Accommodation and repair of a UV photoproduct in DNA at different rotational settings on the nucleosome surface

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4245940

7 July 2018

Mutations induced by ultraviolet light

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4245940

7 July 2018

Crystal structure of a photolyase bound to a CPD-like DNA lesion after in situ repair

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4245940

7 July 2018

Crystal structure of a DNA decamer containing a cis-syn thymine dimer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4245940

7 July 2018

Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 a resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4245940

7 July 2018

Nuclease P1 digestion combined with tandem mass spectrometry for the structure determination of DNA photoproducts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4245940

7 July 2018

Synthesis and nucleosome structure of DNA containing a UV photoproduct at a specific site

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4245940

7 July 2018

2'-Deoxycytidine glycols, a missing link in the free radical-mediated oxidation of DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4245940

7 July 2018

DNA strand breaking by the hydroxyl radical is governed by the accessible surface areas of the hydrogen atoms of the DNA backbone

1 reference

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7 July 2018

Site-specific repair of cyclobutane pyrimidine dimers in a positioned nucleosome by photolyase and T4 endonuclease V in vitro

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4245940

7 July 2018

Crystal structure of the nucleosome core particle at 2.8 A resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4245940

7 July 2018

Formation and processing of UV photoproducts: effects of DNA sequence and chromatin environment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4245940

7 July 2018

Atomic model of a pyrimidine dimer excision repair enzyme complexed with a DNA substrate: structural basis for damaged DNA recognition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4245940

7 July 2018

Accessibility of a glucocorticoid response element in a nucleosome depends on its rotational positioning

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4245940

7 July 2018

UV-induced formation of pyrimidine dimers in nucleosome core DNA is strongly modulated with a period of 10.3 bases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4245940

7 July 2018

Artificial nucleosome positioning sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4245940

7 July 2018

Origin of ultraviolet damage in DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4245940

7 July 2018

Thymine dimer formation as a probe of the path of DNA in and between nucleosomes in intact chromatin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4245940

7 July 2018

Nonrandom induction of pyrimidine-pyrimidone (6-4) photoproducts in ultraviolet-irradiated human chromatin

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4245940

7 July 2018

The structure of DNA in a nucleosome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4245940

7 July 2018

Effects of DNA looping on pyrimidine dimer formation

1 reference

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7 July 2018

Cyclobutane pyrimidine dimers form preferentially at the major p53 mutational hotspot in UVB-induced mouse skin tumors

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU1049

21 January 2018

Individual determination of the yield of the main UV-induced dimeric pyrimidine photoproducts in DNA suggests a high mutagenicity of CC photolesions.

1 reference

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21 January 2018

A Correlation of Reaction Rates

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https://api.crossref.org/works/10.1093%2FNAR%2FGKU1049

21 January 2018

Conformational control of TT dimerization in DNA conjugates. A molecular dynamics study

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21 January 2018

A high-resolution analysis of chromatin structure along p53 sequences

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27 October 2018

UV damage to DNA strongly influences its rotational setting on the histone surface of reconstituted nucleosomes.

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27 October 2018

Nucleosomes suppress spontaneous mutations base-specifically in eukaryotes

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https://pubmed.ncbi.nlm.nih.gov/25389265

12 December 2020

based on heuristic

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Analysis of mutation spectra in UVB-exposed mouse skin epidermis and dermis: frequent occurrence of C-->T transition at methylated CpG-associated dipyrimidine sites

1 reference

https://pubmed.ncbi.nlm.nih.gov/25389265

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular models for DNA damaged by photoreaction

1 reference

https://pubmed.ncbi.nlm.nih.gov/25389265

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA repair within nucleosome cores of UV-irradiated human cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/25389265

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Kinetic analysis of the deamination reactions of cyclobutane dimers of thymidylyl-3',5'-2'-deoxycytidine and 2'-deoxycytidylyl-3',5'-thymidine

1 reference

https://pubmed.ncbi.nlm.nih.gov/25389265

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Unfolding of nucleosome cores dramatically changes the distribution of ultraviolet photoproducts in DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/25389265

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Translational positioning of a nucleosomal glucocorticoid response element modulates glucocorticoid receptor affinity

1 reference

https://pubmed.ncbi.nlm.nih.gov/25389265

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/GKU1049

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25389265%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

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Europe PubMed Central

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22 February 2020

PubMed publication ID

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22 February 2020

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