Transcription restores DNA repair to heterochromatin, determining regional mutation rates in cancer genomes. (Q34625791)

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24 February 2020

title

Transcription restores DNA repair to heterochromatin, determining regional mutation rates in cancer genomes (English)

1 reference

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24 February 2020

19

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24 February 2020

Sarah T Arron

27

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24 February 2020

Raymond J. Cho

30

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25

Joe W Gray

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7

Eric A Collisson

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26

Paul T Spellman

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24 February 2020

author name string

Christina L Zheng

1

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24 February 2020

Nicholas J Wang

2

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Jongsuk Chung

3

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24 February 2020

Homayoun Moslehi

4

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J Zachary Sanborn

5

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24 February 2020

Joseph S Hur

6

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24 February 2020

Swapna S Vemula

8

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Agne Naujokas

9

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Kami E Chiotti

10

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Jeffrey B Cheng

11

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Hiva Fassihi

12

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Andrew J Blumberg

13

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Celeste V Bailey

14

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Gary M Fudem

15

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Frederick G Mihm

16

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Bari B Cunningham

17

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Isaac M Neuhaus

18

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Dennis H Oh

20

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James E Cleaver

21

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Philip E LeBoit

22

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Joseph F Costello

23

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Alan R Lehmann

24

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Nam Huh

28

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Elizabeth Purdom

29

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publication date

20 November 2014

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24 February 2020

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24 February 2020

volume

9

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issue

4

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24 February 2020

page(s)

1228-1234

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Reduced local mutation density in regulatory DNA of cancer genomes is linked to DNA repair

24 February 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254608

Hypermutation of the inactive X chromosome is a frequent event in cancer

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254608

Transcriptome and genome sequencing uncovers functional variation in humans

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254608

Signatures of mutational processes in human cancer

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254608

Mutational heterogeneity in cancer and the search for new cancer-associated genes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254608

The Genotype-Tissue Expression (GTEx) project

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254608

DNA replication timing and higher-order nuclear organization determine single-nucleotide substitution patterns in cancer genomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254608

STAR: ultrafast universal RNA-seq aligner

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254608

Shaping chromatin for repair.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254608

An integrated encyclopedia of DNA elements in the human genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254608

The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254608

Shining a light on xeroderma pigmentosum

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254608

Combinatorial patterning of chromatin regulators uncovered by genome-wide location analysis in human cells

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254608

7 July 2018

Xeroderma pigmentosum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254608

Loss-of-function mutations in Notch receptors in cutaneous and lung squamous cell carcinoma

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254608

Exome sequencing of head and neck squamous cell carcinoma reveals inactivating mutations in NOTCH1

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254608

A comprehensive catalogue of somatic mutations from a human cancer genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254608

Sequencing newly replicated DNA reveals widespread plasticity in human replication timing

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254608

The Sequence Alignment/Map format and SAMtools

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254608

Human mutation rate associated with DNA replication timing

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254608

Mapping short DNA sequencing reads and calling variants using mapping quality scores

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254608

Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254608

High-resolution profiling of histone methylations in the human genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254608

Transcription domain-associated repair in human cells

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254608

Xeroderma pigmentosum group C in an isolated region of Guatemala

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254608

Terminally differentiated human neurons repair transcribed genes but display attenuated global DNA repair and modulation of repair gene expression

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254608

Transcription-coupled repair removes both cyclobutane pyrimidine dimers and 6-4 photoproducts with equal efficiency and in a sequential way from transcribed DNA in xeroderma pigmentosum group C fibroblasts

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254608

Chromatin organization is a major influence on regional mutation rates in human cancer cells.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254608

The large-scale distribution of somatic mutations in cancer genomes.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254608

Cancer in xeroderma pigmentosum and related disorders of DNA repair

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254608

10.1016/J.CELREP.2014.10.031

26 October 2018

Identifiers

DOI

1 reference

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24 February 2020

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24 February 2020

PubMed publication ID

25456125

1 reference

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