Low-frequency normal modes that describe allosteric transitions in biological nanomachines are robust to sequence variations (Q34650683)

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20 January 2020

title

Low-frequency normal modes that describe allosteric transitions in biological nanomachines are robust to sequence variations (English)

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20 January 2020

1

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3

D Thirumalai

1 reference

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20 January 2020

author name string

Bernard R Brooks

series ordinal

2

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language of work or name

English

0 references

publication date

8 May 2006

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16682636%20AND%20SRC:MED&resulttype=core&format=json

Proceedings of the National Academy of Sciences of the United States of America

20 January 2020

published in

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volume

103

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page(s)

7664-7669

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issue

20

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describes a project that uses

20 January 2020

Bayes' theorem

1 reference

18 June 2022

https://europepmc.org/article/PMC/1472502

based on heuristic

inferred from PubMed Central ID database lookup

cites work

Coarse-grained normal mode analysis in structural biology

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A comparative study of motor-protein motions by using a simple elastic-network model

7 July 2018

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Electron cryo-microscopy shows how strong binding of myosin to actin releases nucleotide

7 July 2018

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A structural state of the myosin V motor without bound nucleotide

7 July 2018

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Evolutionarily conserved networks of residues mediate allosteric communication in proteins

7 July 2018

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Efficient generation of feasible pathways for protein conformational transitions

7 July 2018

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Simplified normal mode analysis of conformational transitions in DNA-dependent polymerases: the elastic network model

7 July 2018

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Chaperonin-mediated protein folding

7 July 2018

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7 July 2018

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Conformational change of proteins arising from normal mode calculations

7 July 2018

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Anisotropy of fluctuation dynamics of proteins with an elastic network model

7 July 2018

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Three conformational states of scallop myosin S1

7 July 2018

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Structural mechanism of muscle contraction.

7 July 2018

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Evolutionarily conserved pathways of energetic connectivity in protein families

7 July 2018

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DNA polymerases: structural diversity and common mechanisms

7 July 2018

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Cooperative fluctuations and subunit communication in tryptophan synthase.

7 July 2018

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Identification of kinetically hot residues in proteins

7 July 2018

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Crystal structures of open and closed forms of binary and ternary complexes of the large fragment of Thermus aquaticus DNA polymerase I: structural basis for nucleotide incorporation.

7 July 2018

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Systematic analysis of domain motions in proteins from conformational change: new results on citrate synthase and T4 lysozyme

7 July 2018

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The crystal structure of the asymmetric GroEL-GroES-(ADP)7 chaperonin complex

7 July 2018

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Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential.

7 July 2018

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Residues in chaperonin GroEL required for polypeptide binding and release

7 July 2018

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Structure of large fragment of Escherichia coli DNA polymerase I complexed with dTMP

7 July 2018

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Maturation dynamics of bacteriophage HK97 capsid.

7 July 2018

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Molecular mechanisms of chaperonin GroEL-GroES function

21 January 2018

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A structural model for actin-induced nucleotide release in myosin

21 January 2018

1 reference

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Gaussian Dynamics of Folded Proteins

21 January 2018

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Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis

21 January 2018

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A single highly mutable catalytic site amino acid is critical for DNA polymerase fidelity

21 January 2018

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Dynamics of proteins predicted by molecular dynamics simulations and analytical approaches: application to alpha-amylase inhibitor.

26 October 2018

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Getting a grip on how DNA polymerases function

26 October 2018

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Network of dynamically important residues in the open/closed transition in polymerases is strongly conserved

21 January 2018

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Thermus aquaticus DNA polymerase I mutants with altered fidelity. Interacting mutations in the O-helix

21 January 2018

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21 January 2018

Identifiers

DOI

10.1073/PNAS.0510426103

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16682636%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

0 references

1 reference

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20 January 2020

1 reference