Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss (Q34651956)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21368132%20AND%20SRC:MED&resulttype=core&format=json

24 January 2020

title

Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss (English)

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24 January 2020

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1

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24 January 2020

3

Michael Freeling

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24 January 2020

author name string

Nathan M Springer

series ordinal

2

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24 January 2020

language of work or name

English

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publication date

22 February 2011

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Proceedings of the National Academy of Sciences of the United States of America

24 January 2020

published in

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24 January 2020

volume

108

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24 January 2020

page(s)

4069-4074

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24 January 2020

issue

10

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Genetic interactions reveal the evolutionary trajectories of duplicate genes

24 January 2020

cites work

1 reference

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Pervasive gene content variation and copy number variation in maize and its undomesticated progenitor

7 July 2018

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Digital gene expression signatures for maize development.

7 July 2018

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Following tetraploidy in maize, a short deletion mechanism removed genes preferentially from one of the two homologs.

7 July 2018

1 reference

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The collapse of gene complement following whole genome duplication

7 July 2018

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

7 July 2018

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Characterization of duplicate gene evolution in the recent natural allopolyploid Tragopogon miscellus by next-generation sequencing and Sequenom iPLEX MassARRAY genotyping.

7 July 2018

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Evolutionary rate variation, genomic dominance and duplicate gene expression evolution during allotetraploid cotton speciation.

7 July 2018

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The B73 Maize Genome: Complexity, Diversity, and Dynamics

7 July 2018

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Loss of RNA-dependent RNA polymerase 2 (RDR2) function causes widespread and unexpected changes in the expression of transposons, genes, and 24-nt small RNAs

7 July 2018

1 reference

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Exceptional diversity, non-random distribution, and rapid evolution of retroelements in the B73 maize genome

7 July 2018

1 reference

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The gene balance hypothesis: implications for gene regulation, quantitative traits and evolution

7 July 2018

1 reference

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Gene and genome duplications: the impact of dosage-sensitivity on the fate of nuclear genes

7 July 2018

1 reference

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Bias in plant gene content following different sorts of duplication: tandem, whole-genome, segmental, or by transposition

7 July 2018

1 reference

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

7 July 2018

1 reference

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The Sorghum bicolor genome and the diversification of grasses

7 July 2018

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Structure and expression analysis of rice paleo duplications

7 July 2018

1 reference

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Identification and characterization of shared duplications between rice and wheat provide new insight into grass genome evolution

7 July 2018

1 reference

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Consequences of genome duplication

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053962

Physical and genetic structure of the maize genome reflects its complex evolutionary history

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053962

The medaka draft genome and insights into vertebrate genome evolution

7 July 2018

1 reference

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Patterns in grass genome evolution

7 July 2018

1 reference

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Genetic and epigenetic mechanisms for gene expression and phenotypic variation in plant polyploids

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053962

Biological consequences of dosage dependent gene regulatory systems

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053962

Following tetraploidy in an Arabidopsis ancestor, genes were removed preferentially from one homeolog leaving clusters enriched in dose-sensitive genes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053962

Genomewide nonadditive gene regulation in Arabidopsis allotetraploids

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053962

Modeling gene and genome duplications in eukaryotes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053962

Close split of sorghum and maize genome progenitors

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053962

Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution

7 July 2018

1 reference

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Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics

7 July 2018

1 reference

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Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae

7 July 2018

1 reference

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Role of duplicate genes in genetic robustness against null mutations

7 July 2018

1 reference

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Protein-coding genes are epigenetically regulated in Arabidopsis polyploids

7 July 2018

1 reference

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The developmental dynamics of the maize leaf transcriptome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053962

Structural and functional divergence of a 1-Mb duplicated region in the soybean (Glycine max) genome and comparison to an orthologous region from Phaseolus vulgaris

26 October 2018

1 reference

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Genome-wide and organ-specific landscapes of epigenetic modifications and their relationships to mRNA and small RNA transcriptomes in maize.

26 October 2018

1 reference

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Molecular evolution of FLORICAULA/LEAFY orthologs in the Andropogoneae (Poaceae).

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053962

Genome duplication led to highly selective expansion of the Arabidopsis thaliana proteome.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053962

Rate variation among nuclear genes and the age of polyploidy in Gossypium.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053962

Genome-wide transcription analyses in rice using tiling microarrays

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053962

9 December 2018

Identifiers

DOI

10.1073/PNAS.1101368108

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24 January 2020

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24 November 2022

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24 January 2020

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