Ammonia oxidation coupled to CO2 fixation by archaea and bacteria in an agricultural soil (Q34652251)

3 August 2017

Ammonia oxidation coupled to CO2 fixation by archaea and bacteria in an agricultural soil (English)

1 reference

3 August 2017

0 references

0 references

0 references

1 reference

3

Ralf Conrad

1 reference

3 August 2017

Jennifer Pratscher

1

1 reference

ORCID Public Data File 2021

author name string

Marc G Dumont

series ordinal

2

1 reference

PubMed ID

21368116

3 August 2017

language of work or name

English

0 references

publication date

22 February 2011

1 reference

Proceedings of the National Academy of Sciences of the United States of America

3 August 2017

1 reference

3 August 2017

108

1 reference

3 August 2017

10

1 reference

3 August 2017

4170-4175

1 reference

Autotrophic ammonia oxidation by soil thaumarchaea.

3 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053987

Distinct gene set in two different lineages of ammonia-oxidizing archaea supports the phylum Thaumarchaeota

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053987

Autotrophic carbon fixation in archaea.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053987

Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053987

Study of the distribution of autotrophic CO2 fixation cycles in Crenarchaeota.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053987

Autotrophic carbon dioxide assimilation in Thermoproteales revisited

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053987

Archaeal diversity and the prevalence of Crenarchaeota in salt marsh sediments

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053987

A dicarboxylate/4-hydroxybutyrate autotrophic carbon assimilation cycle in the hyperthermophilic Archaeum Ignicoccus hospitalis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053987

Nitrification in terrestrial hot springs of Iceland and Kamchatka.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053987

Mesophilic Crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053987

A moderately thermophilic ammonia-oxidizing crenarchaeote from a hot spring

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053987

Cultivation of a thermophilic ammonia oxidizing archaeon synthesizing crenarchaeol

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053987

A 3-hydroxypropionate/4-hydroxybutyrate autotrophic carbon dioxide assimilation pathway in Archaea

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053987

Quantitative distribution of presumptive archaeal and bacterial nitrifiers in Monterey Bay and the North Pacific Subtropical Gyre

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053987

Insights into the autotrophic CO2 fixation pathway of the archaeon Ignicoccus hospitalis: comprehensive analysis of the central carbon metabolism.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053987

Adaptations to energy stress dictate the ecology and evolution of the Archaea

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053987

Methodological considerations for the use of stable isotope probing in microbial ecology

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053987

Archaea predominate among ammonia-oxidizing prokaryotes in soils

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053987

Archaeal nitrification in the ocean

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053987

Pathways of carbon assimilation and ammonia oxidation suggested by environmental genomic analyses of marine Crenarchaeota

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053987

Community genomics among stratified microbial assemblages in the ocean's interior

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053987

Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053987

Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053987

Isolation of an autotrophic ammonia-oxidizing marine archaeon

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053987

Stable isotope probing - linking microbial identity to function

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053987

Ammonia-oxidizing bacteria respond to multifactorial global change

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053987

Simultaneous fluorescence in situ hybridization of mRNA and rRNA in environmental bacteria

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053987

Environmental genome shotgun sequencing of the Sargasso Sea

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053987

ARB: a software environment for sequence data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053987

mRNA extraction and reverse transcription-PCR protocol for detection of nifH gene expression by Azotobacter vinelandii in soil

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053987

Phylogeny and functional expression of ribulose 1,5-bisphosphate carboxylase/oxygenase from the autotrophic ammonia-oxidizing bacterium Nitrosospira sp. isolate 40KI

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053987

Ammonia-oxidizing bacteria: a model for molecular microbial ecology

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053987

Presence of acetyl coenzyme A (CoA) carboxylase and propionyl-CoA carboxylase in autotrophic Crenarchaeota and indication for operation of a 3-hydroxypropionate cycle in autotrophic carbon fixation.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053987

Identification and activities in situ of Nitrosospira and Nitrospira spp. as dominant populations in a nitrifying fluidized bed reactor

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053987

Diversity and structure of the methanogenic community in anoxic rice paddy soil microcosms as examined by cultivation and direct 16S rRNA gene sequence retrieval.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053987

Bicarbonate uptake by marine Crenarchaeota

7 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1010981108

Changes in the community structure and activity of betaproteobacterial ammonia-oxidizing sediment bacteria along a freshwater-marine gradient

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1010981108

Bacteria rather than Archaea dominate microbial ammonia oxidation in an agricultural soil.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1010981108

Dynamics and functional relevance of ammonia-oxidizing archaea in two agricultural soils

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1010981108

RNA stable-isotope probing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1010981108

Enhanced sensitivity of DNA- and rRNA-based stable isotope probing by fractionation and quantitative analysis of isopycnic centrifugation gradients

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1010981108

Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1010981108

DNA stable-isotope probing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1010981108

Abundance and activity of uncultured methanotrophic bacteria involved in the consumption of atmospheric methane in two forest soils.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1010981108

Effects of temperature and fertilizer on activity and community structure of soil ammonia oxidizers

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1010981108

Nitrification driven by bacteria and not archaea in nitrogen-rich grassland soils

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1010981108

Growth of ammonia-oxidizing archaea in soil microcosms is inhibited by acetylene

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1010981108

Ammonia-oxidizing bacteria and archaea grow under contrasting soil nitrogen conditions

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1010981108

High rates of nitrification and nitrate turnover in undisturbed coniferous forests

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1010981108

Autotrophic carbon dioxide fixation in Acidianus brierleyi

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21368116

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

(13)C incorporation into DNA as a means of identifying the active components of ammonia-oxidizer populations

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21368116

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1010981108

1 reference

3 August 2017

0 references

1 reference

3 August 2017

1 reference

PubMed ID

21368116