Bacteroides dorei dominates gut microbiome prior to autoimmunity in Finnish children at high risk for type 1 diabetes (Q34668698)

3 August 2017

title

Bacteroides dorei dominates gut microbiome prior to autoimmunity in Finnish children at high risk for type 1 diabetes (English)

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3 August 2017

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15

Heikki Hyöty

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Riitta Veijola

16

Riitta Veijola

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Noora Nurminen

Noora Nurminen

14

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Jorma Toppari

13

Jorma Toppari

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3 August 2017

Jorma Ilonen

11

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Mikael Knip

Mikael Knip

12

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Desmond Schatz

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Desmond Schatz

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3 August 2017

author name string

Austin G Davis-Richardson

1

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3 August 2017

Alexandria N Ardissone

2

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3 August 2017

Raquel Dias

3

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3 August 2017

Ville Simell

4

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3 August 2017

Michael T Leonard

5

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3 August 2017

Kaisa M Kemppainen

6

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3 August 2017

Jennifer C Drew

7

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3 August 2017

Mark A Atkinson

9

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3 August 2017

Bryan Kolaczkowski

10

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3 August 2017

Tuula Simell

17

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3 August 2017

Juha Mykkänen

18

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3 August 2017

Olli Simell

19

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3 August 2017

Eric W Triplett

20

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3 August 2017

publication date

10 December 2014

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Frontiers in Microbiology

3 August 2017

published in

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3 August 2017

volume

5

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3 August 2017

page(s)

678

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describes a project that uses

3 August 2017

ggplot2

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pmc&rettype=xml&id=4261809

ggplot2

2 references

10 June 2022

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

phyloseq

Phyloseq

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

The methylome of the gut microbiome: disparate Dam methylation patterns in intestinal Bacteroides dorei

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261809

Structure and functions of the gut microbiome.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261809

The prevalence of species and strains in the human microbiome: a resource for experimental efforts

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261809

Species differentiation of Bacteroides dorei from Bacteroides vulgatus and Bacteroides ovatus from Bacteroides xylanisolvens - back to basics

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261809

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261809

Antianaerobic antimicrobials: spectrum and susceptibility testing

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261809

Fecal microbiota composition differs between children with β-cell autoimmunity and those without

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261809

The human milk microbiome changes over lactation and is shaped by maternal weight and mode of delivery

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261809

Characterization of the Relative Abundance of the Citrus Pathogen Ca. Liberibacter Asiaticus in the Microbiome of Its Insect Vector, Diaphorina citri, using High Throughput 16S rRNA Sequencing.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261809

PANDAseq: paired-end assembler for illumina sequences

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261809

Phyloseq: a bioconductor package for handling and analysis of high-throughput phylogenetic sequence data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261809

Gut microbiome metagenomics analysis suggests a functional model for the development of autoimmunity for type 1 diabetes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261809

Linking long-term dietary patterns with gut microbial enterotypes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261809

Commensal Bacteroides species induce colitis in host-genotype-specific fashion in a mouse model of inflammatory bowel disease

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261809

Primary dietary intervention study to reduce the risk of islet autoimmunity in children at increased risk for type 1 diabetes: the BABYDIET study

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261809

The incidence of type-1 diabetes in NOD mice is modulated by restricted flora not germ-free conditions

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261809

Intestinal Bacteroides species associated with coeliac disease

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261809

Search and clustering orders of magnitude faster than BLAST

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261809

Toward defining the autoimmune microbiome for type 1 diabetes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261809

Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261809

A distinctive 'microbial signature' in celiac pediatric patients

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261809

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261809

Lactobacillus johnsonii N6.2 mitigates the development of type 1 diabetes in BB-DP rats

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261809

QIIME allows analysis of high-throughput community sequencing data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261809

Short-term antibiotic treatment has differing long-term impacts on the human throat and gut microbiome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261809

Influence of fecal sample storage on bacterial community diversity.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261809

Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261809

Culture-independent identification of gut bacteria correlated with the onset of diabetes in a rat model.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261809

The Environmental Determinants of Diabetes in the Young (TEDDY) Study

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261809

The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261809

Innate immunity and intestinal microbiota in the development of Type 1 diabetes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261809

RNAmmer: consistent and rapid annotation of ribosomal RNA genes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261809

Bacteroides dorei sp. nov., isolated from human faeces.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261809

Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261809

Environmental triggers and determinants of type 1 diabetes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261809

PHYML Online--a web server for fast maximum likelihood-based phylogenetic inference

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261809

What you see may not be what you get: a brief, nontechnical introduction to overfitting in regression-type models

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261809

MUSCLE: multiple sequence alignment with high accuracy and high throughput

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261809

The effect of infections on susceptibility to autoimmune and allergic diseases

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261809

Differential induction of colitis and gastritis in HLA-B27 transgenic rats selectively colonized with Bacteroides vulgatus or Escherichia coli

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261809

A review of the recent epidemiological data on the worldwide incidence of type 1 (insulin-dependent) diabetes mellitus. World Health Organization DIAMOND Project Group

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261809

Bacteroides vulgatus outer membrane antigens associated with carrageenan-induced colitis in guinea pigs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261809

Fermentation of mucin and plant polysaccharides by strains of Bacteroides from the human colon

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261809

Compromised gut microbiota networks in children with anti-islet cell autoimmunity

7 July 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00678

Quantitative analysis of bacterial DNA from Mycobacteria spp., Bacteroides vulgatus, and Escherichia coli in tissue samples from patients with inflammatory bowel diseases.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00678

Short pyrosequencing reads suffice for accurate microbial community analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00678

Rapid identification of the species of the Bacteroides fragilis group by multiplex PCR assays using group- and species-specific primers

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00678

Influence of environmental and genetic factors linked to celiac disease risk on infant gut colonization by Bacteroides species.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00678

BABYDIET, a feasibility study to prevent the appearance of islet autoantibodies in relatives of patients with Type 1 diabetes by delaying exposure to gluten

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00678

The suppressive effect of bifidobacteria on Bacteroides vulgatus, a putative pathogenic microbe in inflammatory bowel disease

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00678

OmpA variants affecting the adherence of ulcerative colitis-derived Bacteroides vulgatus.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261809

PHYLOSEQ: A BIOCONDUCTOR PACKAGE FOR HANDLING AND ANALYSIS OF HIGH-THROUGHPUT PHYLOGENETIC SEQUENCE DATA

26 October 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00678

Population-based genetic screening for the estimation of Type 1 diabetes mellitus risk in Finland: selective genotyping of markers in the HLA-DQB1, HLA-DQA1 and HLA-DRB1 loci

21 January 2018

1 reference

12 December 2020

Early seroconversion and rapidly increasing autoantibody concentrations predict prepubertal manifestation of type 1 diabetes in children at genetic risk

1 reference

12 December 2020

Comment on: Brugman S et al. (2006) Antibiotic treatment partially protects against type 1 diabetes in the Bio-Breeding diabetes-prone rat. Is the gut flora involved in the development of type 1 diabetes? Diabetologia 49:2105-2108

1 reference

12 December 2020

Prevention of gut inflammation by Bifidobacterium in dextran sulfate-treated gnotobiotic mice associated with Bacteroides strains isolated from ulcerative colitis patients

1 reference

12 December 2020

Antibiotic treatment partially protects against type 1 diabetes in the Bio-Breeding diabetes-prone rat. Is the gut flora involved in the development of type 1 diabetes?

1 reference

12 December 2020

Age at the introduction of solid foods during the first year and allergic sensitization at age 5 years

1 reference

12 December 2020

Identifiers

DOI

10.3389/FMICB.2014.00678

1 reference

3 August 2017

1 reference

3 August 2017

1 reference