Quantifying sequence proportions in a DNA-based diet study using Ion Torrent amplicon sequencing: which counts count? (Q34670234)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23590207%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

title

Quantifying sequence proportions in a DNA-based diet study using Ion Torrent amplicon sequencing: which counts count? (English)

1 reference

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28 February 2020

1 reference

1

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28 February 2020

author name string

Austen C Thomas

2

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23590207%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

Amanda K Shaffer

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23590207%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

Andrew W Trites

4

1 reference

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28 February 2020

Simon N Jarman

5

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28 February 2020

publication date

17 April 2013

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Molecular Ecology Resources

28 February 2020

published in

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28 February 2020

volume

13

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28 February 2020

page(s)

620-633

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28 February 2020

issue

4

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PCR-induced sequence artifacts and bias: insights from comparison of two 16S rRNA clone libraries constructed from the same sample.

28 February 2020

cites work

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12103

Quantifying microbial communities with 454 pyrosequencing: does read abundance count?

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12103

Meta-barcoding of 'dirt' DNA from soil reflects vertebrate biodiversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12103

Barcoded primers used in multiplex amplicon pyrosequencing bias amplification

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12103

Sequencing our way towards understanding global eukaryotic biodiversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12103

Proportion of prey consumed can be determined from faecal DNA using real-time PCR.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12103

Pyrosequencing of prey DNA in reptile faeces: analysis of earthworm consumption by slow worms

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12103

454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12103

QIIME allows analysis of high-throughput community sequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12103

Systematic bias in high-throughput sequencing data and its correction by BEADS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12103

Quantitative analysis of prey DNA in pinniped faeces: potential to estimate diet composition?

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12103

Molecular scatology as a tool to study diet: analysis of prey DNA in scats from captive Steller sea lions

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12103

Analysis of Australian fur seal diet by pyrosequencing prey DNA in faeces.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12103

Pyrosequencing faecal DNA to determine diet of little penguins: is what goes in what comes out?

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12103

Environmental barcoding: a next-generation sequencing approach for biomonitoring applications using river benthos

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12103

Synthetic spike-in standards for RNA-seq experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12103

Influence of management practices on large herbivore diet—Case of European bison in Białowieża Primeval Forest (Poland)

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12103

Targeted high-throughput sequencing of tagged nucleic acid samples

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12103

ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12103

DNA-based faecal dietary analysis: a comparison of qPCR and high throughput sequencing approaches

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12103

Who is eating what: diet assessment using next generation sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12103

Evaluating high-throughput sequencing as a method for metagenomic analysis of nematode diversity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12103

A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12103

High-throughput sequencing offers insight into mechanisms of resource partitioning in cryptic bat species

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12103

An integrated semiconductor device enabling non-optical genome sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12103

A window into third-generation sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12103

Carnivore diet analysis based on next-generation sequencing: application to the leopard cat (Prionailurus bengalensis) in Pakistan

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12103

Effect of primer mismatch, annealing temperature and PCR cycle number on 16S rRNA gene-targetting bacterial community analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12103

Microbial diversity in the deep sea and the underexplored "rare biosphere"

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12103

Analysing diet of small herbivores: the efficiency of DNA barcoding coupled with high-throughput pyrosequencing for deciphering the composition of complex plant mixtures

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12103

Development and application of DNA techniques for validating and improving pinniped diet estimates

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12103

New perspectives in diet analysis based on DNA barcoding and parallel pyrosequencing: the trnL approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12103

DNA barcoding for ecologists

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12103

Blocking primers to enhance PCR amplification of rare sequences in mixed samples - a case study on prey DNA in Antarctic krill stomachs

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12103

Next-generation sequencing of microbial communities in the Athabasca River and its tributaries in relation to oil sands mining activities

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12103