Imputation and quality control steps for combining multiple genome-wide datasets (Q34677930)

3 August 2017

Imputation and quality control steps for combining multiple genome-wide datasets (English)

1 reference

3 August 2017

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1 reference

8

Gail P Jarvik

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Leah C. Kottyan

Leah C Kottyan

9

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Mariza de Andrade

Mariza de Andrade

2

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Helena Kuivaniemi

Helena Kuivaniemi

4

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Gerard Tromp

Gerard Tromp

3

0 references

Marylyn D. Ritchie

18

Marylyn D Ritchie

1 reference

3 August 2017

14

Dana C Crawford

1 reference

3 August 2017

15

Jonathan L Haines

1 reference

3 August 2017

Shubhabrata Mukherjee

7

Shubhabrata Mukherjee

0 references

David R Crosslin

17

David Crosslin

1 reference

3 August 2017

Shefali S Verma

1

1 reference

3 August 2017

Elizabeth Pugh

5

1 reference

3 August 2017

Bahram Namjou-Khales

6

1 reference

3 August 2017

Amber Burt

10

1 reference

3 August 2017

Yuki Bradford

11

1 reference

3 August 2017

Gretta D Armstrong

12

1 reference

3 August 2017

Kimberly Derr

13

1 reference

3 August 2017

Rongling Li

16

1 reference

3 August 2017

11 December 2014

1 reference

3 August 2017

Frontiers in Genetics

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3 August 2017

5

1 reference

3 August 2017

370

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Controlling for population structure and genotyping platform bias in the eMERGE multi-institutional biobank linked to electronic health records

3 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4263197

Opportunities for genomic clinical decision support interventions

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4263197

Imputation-based genomic coverage assessments of current human genotyping arrays

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4263197

The Electronic Medical Records and Genomics (eMERGE) Network: past, present, and future

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4263197

Assessment of genotype imputation performance using 1000 Genomes in African American studies

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4263197

An integrated map of genetic variation from 1,092 human genomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4263197

Adjustment for population stratification via principal components in association analysis of rare variants

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4263197

A high-performance computing toolset for relatedness and principal component analysis of SNP data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4263197

The metabochip, a custom genotyping array for genetic studies of metabolic, cardiovascular, and anthropometric traits

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4263197

Fast and accurate genotype imputation in genome-wide association studies through pre-phasing

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4263197

Genotype imputation with thousands of genomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4263197

Pitfalls of merging GWAS data: lessons learned in the eMERGE network and quality control procedures to maintain high data quality

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4263197

Imputation of low-frequency variants using the HapMap3 benefits from large, diverse reference sets

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4263197

The eMERGE Network: a consortium of biorepositories linked to electronic medical records data for conducting genomic studies

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4263197

MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4263197

Robust relationship inference in genome-wide association studies

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4263197

Integrating common and rare genetic variation in diverse human populations

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4263197

Quantification of population structure using correlated SNPs by shrinkage principal components

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4263197

A new statistic to evaluate imputation reliability

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4263197

ProbABEL package for genome-wide association analysis of imputed data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4263197

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4263197

Current software for genotype imputation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4263197

A flexible and accurate genotype imputation method for the next generation of genome-wide association studies

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4263197

A unified approach to genotype imputation and haplotype-phase inference for large data sets of trios and unrelated individuals

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4263197

A comprehensive evaluation of SNP genotype imputation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4263197

Practical issues in imputation-based association mapping

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4263197

Analyses and comparison of accuracy of different genotype imputation methods

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4263197

Missing data imputation and haplotype phase inference for genome-wide association studies

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4263197

Interpreting principal component analyses of spatial population genetic variation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4263197

PLINK: a tool set for whole-genome association and population-based linkage analyses

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4263197

Imputation-based analysis of association studies: candidate regions and quantitative traits

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4263197

A new multipoint method for genome-wide association studies by imputation of genotypes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4263197

Principal components analysis corrects for stratification in genome-wide association studies

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4263197

Improved whole-chromosome phasing for disease and population genetic studies

7 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.3389%2FFGENE.2014.00370

Is 'forward' the same as 'plus'?…and other adventures in SNP allele nomenclature.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.3389%2FFGENE.2014.00370

The effect of genome-wide association scan quality control on imputation outcome for common variants

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.3389%2FFGENE.2014.00370

21 January 2018

The UCSC Genome Browser

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4263197

26 October 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/25566314

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.3389/FGENE.2014.00370

1 reference

3 August 2017

1 reference

3 August 2017

1 reference