The relative inefficiency of sequence weights approaches in determining a nucleotide position weight matrix. (Q34682258)

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20 January 2020

title

The relative inefficiency of sequence weights approaches in determining a nucleotide position weight matrix (English)

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20 January 2020

2

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20 January 2020

author name string

Lee A Newberg

series ordinal

1

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20 January 2020

Charles E Lawrence

series ordinal

3

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20 January 2020

publication date

1 June 2005

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Statistical Applications in Genetics and Molecular Biology

20 January 2020

published in

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20 January 2020

volume

4

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20 January 2020

page(s)

Article13

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maintained by WikiProject

20 January 2020

WikiProject Mathematics

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cites work

Phylogenetic shadowing of primate sequences to find functional regions of the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1479456

Additivity in protein-DNA interactions: how good an approximation is it?

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1479456

Factors influencing the identification of transcription factor binding sites by cross-species comparison.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1479456

The evolution of DNA regulatory regions for proteo-gamma bacteria by interspecies comparisons

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1479456

Optimal classification of protein sequences and selection of representative sets from multiple alignments: application to homologous families and lessons for structural genomics.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1479456

Estimation of reversible substitution matrices from multiple pairs of sequences

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1479456

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1479456

Weighting in sequence space: a comparison of methods in terms of generalized sequences

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1479456

On the use of nucleic acid sequences to infer early branchings in the tree of life

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1479456

Evolutionary trees from DNA sequences: A maximum likelihood approach

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1479456

A new method for calculating evolutionary substitution rates

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1479456

Dating of the human-ape splitting by a molecular clock of mitochondrial DNA

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1479456

Weights for data related by a tree

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1479456

A fast and sensitive multiple sequence alignment algorithm.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1479456

An expectation maximization (EM) algorithm for the identification and characterization of common sites in unaligned biopolymer sequences.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1479456

Weighting aligned protein or nucleic acid sequences to correct for unequal representation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1479456

Molecular phylogeny of Old World monkeys (Cercopithecidae) as inferred from gamma-globin DNA sequences.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1479456

Modeling residue usage in aligned protein sequences via maximum likelihood

26 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16646830

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Position-based sequence weights

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16646830

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.2202/1544-6115.1135

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16646830%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16646830%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

PubMed publication ID

16646830

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16646830%20AND%20SRC:MED&resulttype=core&format=json