Elucidation of in situ polycyclic aromatic hydrocarbon degradation by functional metaproteomics (protein-SIP). (Q34686729)

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29 February 2020

title

Elucidation of in situ polycyclic aromatic hydrocarbon degradation by functional metaproteomics (protein-SIP) (English)

1 reference

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polycyclic aromatic hydrocarbons

29 February 2020

main subject

1 reference

1 reference

Florian-Alexander Herbst

1

1 reference

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29 February 2020

Hans Richnow

5

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29 February 2020

Jana Seifert

7

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29 February 2020

6

Martin von Bergen

1 reference

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29 February 2020

author name string

Arne Bahr

2

1 reference

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29 February 2020

Marcia Duarte

3

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29 February 2020

Dietmar H Pieper

4

1 reference

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29 February 2020

Petra Bombach

8

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29 February 2020

publication date

18 June 2013

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29 February 2020

1 reference

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29 February 2020

volume

13

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29 February 2020

issue

18-19

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29 February 2020

page(s)

2910-2920

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Environmental proteomics: analysis of structure and function of microbial communities.

29 February 2020

cites work

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200569

Microbial metaproteomics: identifying the repertoire of proteins that microorganisms use to compete and cooperate in complex environmental communities.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200569

Less label, more free: approaches in label-free quantitative mass spectrometry.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200569

Quantitative mass spectrometry in proteomics: a critical review

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200569

Methodological considerations for the use of stable isotope probing in microbial ecology

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200569

Functional characterization of an anaerobic benzene-degrading enrichment culture by DNA stable isotope probing

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200569

Protein-based stable isotope probing (protein-SIP) in functional metaproteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200569

Protein-based stable isotope probing (Protein-SIP) reveals active species within anoxic mixed cultures

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200569

Incorporation of carbon and nitrogen atoms into proteins measured by protein-based stable isotope probing (Protein-SIP).

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200569

Microbial interactions during residual oil and n-fatty acid metabolism by a methanogenic consortium.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200569

Protein-SIP enables time-resolved analysis of the carbon flux in a sulfate-reducing, benzene-degrading microbial consortium

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200569

Natural attenuation: what does the subsurface have in store?

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200569

Comparison between geochemical and biological estimates of subsurface microbial activities.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200569

Current approaches for the assessment of in situ biodegradation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200569

Toxicity testing of 16 priority polycyclic aromatic hydrocarbons using Lumistox

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200569

Bacteria-mediated PAH degradation in soil and sediment

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200569

Anaerobic degradation of non-substituted aromatic hydrocarbons

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200569

Microbial biodegradation of polyaromatic hydrocarbons

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200569

Bacterial degradation of aromatic compounds

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200569

In situ assessment of biodegradation potential using biotraps amended with 13C-labeled benzene or toluene.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200569

Benzene oxidation under sulfate-reducing conditions in columns simulating in situ conditions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200569

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200569

False discovery rates of protein identifications: a strike against the two-peptide rule

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200569

Exploring the limits of robust detection of incorporation of 13C by mass spectrometry in protein-based stable isotope probing (protein-SIP).

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200569

Perturbation and interpretation of nitrogen isotope distribution patterns in proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200569

Resolving genetic functions within microbial populations: in situ analyses using rRNA and mRNA stable isotope probing coupled with single-cell raman-fluorescence in situ hybridization.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200569

Gene cloning and in vivo characterization of a dibenzothiophene dioxygenase from Xanthobacter polyaromaticivorans.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200569

Isolation and characterization of Xanthobacter polyaromaticivorans sp. nov. 127W that degrades polycyclic and heterocyclic aromatic compounds under extremely low oxygen conditions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200569

The naphthalene catabolic (nag) genes of Polaromonas naphthalenivorans CJ2: evolutionary implications for two gene clusters and novel regulatory control

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200569

nag genes of Ralstonia (formerly Pseudomonas) sp. strain U2 encoding enzymes for gentisate catabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200569

Optimization of trichloroethylene oxidation by methanotrophs and the use of a colorimetric assay to detect soluble methane monooxygenase activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200569

Characterization of Rhodococcus opacus R7, a strain able to degrade naphthalene and o-xylene isolated from a polycyclic aromatic hydrocarbon-contaminated soil

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200569

Effectiveness of bacterial inoculum and mangrove plants on remediation of sediment contaminated with polycyclic aromatic hydrocarbons.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200569

Naphthalene metabolism and growth inhibition by naphthalene in Polaromonas naphthalenivorans strain CJ2.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200569

Characterization of the upper pathway genes for fluorene metabolism in Terrabacter sp. strain DBF63.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200569

Cloning of dfdA genes from Terrabacter sp. strain DBF63 encoding dibenzofuran 4,4a-dioxygenase and heterologous expression in Streptomyces lividans.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200569

DBToolkit: processing protein databases for peptide-centric proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200569

Direct linking of microbial populations to specific biogeochemical processes by 13C-labelling of biomarkers

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200569