Evolution of MHC class I genes in the endangered loggerhead sea turtle (Caretta caretta) revealed by 454 amplicon sequencing (Q34694204)

4 August 2017

title

Evolution of MHC class I genes in the endangered loggerhead sea turtle (Caretta caretta) revealed by 454 amplicon sequencing (English)

1 reference

4 August 2017

main subject

loggerhead sea turtle

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1 reference

Christophe Eizaguirre

series ordinal

4

object named as

Christophe Eizaguirre

1 reference

4 August 2017

Victor A Stiebens

1

1 reference

4 August 2017

Sonia E Merino

series ordinal

2

1 reference

4 August 2017

Frédéric J J Chain

series ordinal

3

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4 August 2017

publication date

30 April 2013

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4 August 2017

published in

BMC Evolutionary Biology

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4 August 2017

volume

13

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4 August 2017

page(s)

95

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Rapid and adaptive evolution of MHC genes under parasite selection in experimental vertebrate populations

4 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655109

Computational prediction of MHC II-antigen binding supports divergent allele advantage and explains trans-species polymorphism.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655109

Methods for MHC genotyping in non-model vertebrates

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655109

Cheetah paradigm revisited: MHC diversity in the world's largest free-ranging population

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655109

Major histocompatibility complex polymorphism: dynamics and consequences of parasite-mediated local adaptation in fishes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655109

A 454 multiplex sequencing method for rapid and reliable genotyping of highly polymorphic genes in large-scale studies

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655109

Diverse MHC IIB allele repertoire increases parasite resistance and body condition in the Long-tailed giant rat (Leopoldamys sabanus).

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655109

RSCA genotyping of MHC for high-throughput evolutionary studies in the model organism three-spined stickleback Gasterosteus aculeatus

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655109

Does intra-individual major histocompatibility complex diversity keep a golden mean?

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655109

Species-specific evolution of class I MHC genes in iguanas (order: Squamata; subfamily: Iguaninae).

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655109

Quality scores and SNP detection in sequencing-by-synthesis systems

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655109

Transmission of a fatal clonal tumor by biting occurs due to depleted MHC diversity in a threatened carnivorous marsupial

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655109

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655109

The use of coded PCR primers enables high-throughput sequencing of multiple homolog amplification products by 454 parallel sequencing

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655109

MHC class I variation associates with parasite resistance and longevity in tropical pythons.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655109

Rapid and accurate pyrosequencing of angiosperm plastid genomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655109

Major histocompatibility alleles associated with local resistance to malaria in a passerine

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655109

Bias and artifacts in multitemplate polymerase chain reactions (PCR).

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655109

The evolutionary ecology of the major histocompatibility complex

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655109

Bayes empirical bayes inference of amino acid sites under positive selection

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655109

DnaSP, DNA polymorphism analyses by the coalescent and other methods

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655109

MHC class II genes in European wolves: a comparison with dogs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655109

MHC heterozygosity confers a selective advantage against multiple-strain infections

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655109

Scoring residue conservation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655109

A coalescent-based method for detecting and estimating recombination from gene sequences

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655109

Is the decline of desert bighorn sheep from infectious disease the result of low MHC variation?

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655109

Codon-substitution models for heterogeneous selection pressure at amino acid sites

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655109

Effect of gene conversion on polymorphic patterns at major histocompatibility complex loci

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655109

PAML: a program package for phylogenetic analysis by maximum likelihood

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655109

Evolution by the birth-and-death process in multigene families of the vertebrate immune system

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655109

Ancestral polymorphism of Mhc class II genes in mice: implications for balancing selection and the mammalian molecular clock

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655109

The nature of selection on the major histocompatibility complex

7 July 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655109

7 July 2018

https://api.crossref.org/works/10.1186%2F1471-2148-13-95

Trans-species polymorphism of class II Mhc loci in danio fishes

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655109

Population biology of antigen presentation by MHC class I molecules

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655109

The molecular descent of the major histocompatibility complex.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655109

Statistical properties of the number of recombination events in the history of a sample of DNA sequences

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655109

Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655109

Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655109

Maintaining functional major histocompatibility complex diversity under inbreeding: the case of a selfing vertebrate.

7 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-13-95

Genetic diversity and differentiation at MHC genes in island populations of tuatara (Sphenodon spp.).

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-13-95

MHC polymorphism pre-dating speciation

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-13-95

Individual MHC class I and MHC class IIB diversities are associated with male and female reproductive traits in the three-spined stickleback.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-13-95

Major histocompatibility complex (MHC) heterozygote superiority to natural multi-parasite infections in the water vole (Arvicola terrestris).

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-13-95

Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005. MHC Class I genes in the Tuatara (Sphenodon spp.): evolution of the MHC in an ancient reptilian order

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-13-95

New generation sequencers as a tool for genotyping of highly polymorphic multilocus MHC system

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-13-95

Comparative analysis of missing value imputation methods to improve clustering and interpretation of microarray experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-13-95

Fusarium solani is responsible for mass mortalities in nests of loggerhead sea turtle, Caretta caretta, in Boavista, Cape Verde

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-13-95

Recombination in Glomus intraradices, a supposed ancient asexual arbuscular mycorrhizal fungus

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-13-95

Evaluating patterns of convergent evolution and trans-species polymorphism at MHC immunogenes in two sympatric stickleback species

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655109

Living on the edge: how philopatry maintains adaptive potential.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655109

Causes and evolutionary significance of genetic convergence.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655109

Lifetime reproductive success is maximized with optimal major histocompatibility complex diversity.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655109

Simple approach to reduce PCR artefact formation leads to reliable genotyping of MHC and other highly polymorphic loci--implications for evolutionary analysis

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655109

Parasite Selection for Immunogenetic Optimality

26 October 2018

1 reference

12 December 2020

Low Major Histocompatibility Complex Class I (MHC I) Variation in the European Bison (Bison bonasus)

1 reference

12 December 2020

GLOBAL PHYLOGEOGRAPHY OF THE LOGGERHEAD TURTLE (CARETTA CARETTA) AS INDICATED BY MITOCHONDRIAL DNA HAPLOTYPES.

1 reference

12 December 2020

Natural selection at major histocompatibility complex loci of vertebrates

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2148-13-95

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Dimensions Publication ID

4 August 2017

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4 August 2017

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