Acute phase CD8+ T lymphocytes against alternate reading frame epitopes select for rapid viral escape during SIV infection (Q34720403)

4 August 2017

Acute phase CD8+ T lymphocytes against alternate reading frame epitopes select for rapid viral escape during SIV infection (English)

1 reference

4 August 2017

Adam J Ericsen

8

0 references

David H. O’Connor

object named as

David H O'Connor

11

0 references

Austin L. Hughes

10

object named as

Austin L Hughes

1 reference

4 August 2017

Andrew D Walsh

1

1 reference

4 August 2017

Benjamin N Bimber

2

1 reference

4 August 2017

Arpita Das

3

1 reference

4 August 2017

Shari M Piaskowski

4

1 reference

4 August 2017

Eva G Rakasz

5

1 reference

4 August 2017

Alexander T Bean

6

1 reference

4 August 2017

Philip A Mudd

7

1 reference

4 August 2017

Nancy A Wilson

9

1 reference

4 August 2017

Nicholas J Maness

12

1 reference

4 August 2017

language of work or name

English

0 references

publication date

6 May 2013

1 reference

4 August 2017

1 reference

4 August 2017

8

1 reference

4 August 2017

5

1 reference

4 August 2017

e61383

1 reference

Creative Commons Attribution 4.0 International

4 August 2017

start time

6 May 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Experimental analysis of sources of error in evolutionary studies based on Roche/454 pyrosequencing of viral genomes

7 July 2018

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Whole genome deep sequencing of HIV-1 reveals the impact of early minor variants upon immune recognition during acute infection

7 July 2018

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Pyrosequencing reveals restricted patterns of CD8+ T cell escape-associated compensatory mutations in simian immunodeficiency virus

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3645990

CD8+ T cell escape mutations in simian immunodeficiency virus SIVmac239 cause fitness defects in vivo, and many revert after transmission

7 July 2018

1 reference

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Characterization of killer immunoglobulin-like receptor genetics and comprehensive genotyping by pyrosequencing in rhesus macaques

7 July 2018

1 reference

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CTL escape mediated by proteasomal destruction of an HIV-1 cryptic epitope

7 July 2018

1 reference

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Non-conventional sources of peptides presented by MHC class I.

7 July 2018

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7 July 2018

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Whole-genome characterization of human and simian immunodeficiency virus intrahost diversity by ultradeep pyrosequencing

7 July 2018

1 reference

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Transmission of single HIV-1 genomes and dynamics of early immune escape revealed by ultra-deep sequencing

7 July 2018

1 reference

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CD8+ T cell recognition of cryptic epitopes is a ubiquitous feature of AIDS virus infection

7 July 2018

1 reference

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Fast and accurate long-read alignment with Burrows-Wheeler transform

7 July 2018

1 reference

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Viral adaptation to immune selection pressure by HLA class I-restricted CTL responses targeting epitopes in HIV frameshift sequences

7 July 2018

1 reference

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CD8 T cell response and evolutionary pressure to HIV-1 cryptic epitopes derived from antisense transcription

7 July 2018

1 reference

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Novel translation products from simian immunodeficiency virus SIVmac239 Env-encoding mRNA contain both Rev and cryptic T-cell epitopes

7 July 2018

1 reference

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Transcriptional errors in human immunodeficiency virus type 1 generate targets for T-cell responses

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3645990

Ultradeep pyrosequencing detects complex patterns of CD8+ T-lymphocyte escape in simian immunodeficiency virus-infected macaques

7 July 2018

1 reference

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The Sequence Alignment/Map format and SAMtools

7 July 2018

1 reference

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The first T cell response to transmitted/founder virus contributes to the control of acute viremia in HIV-1 infection

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3645990

AIDS virus specific CD8+ T lymphocytes against an immunodominant cryptic epitope select for viral escape

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3645990

Mamu-B*08-positive macaques control simian immunodeficiency virus replication

7 July 2018

1 reference

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Subdominant CD8+ T-cell responses are involved in durable control of AIDS virus replication

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3645990

Vaccine-induced cellular immune responses reduce plasma viral concentrations after repeated low-dose challenge with pathogenic simian immunodeficiency virus SIVmac239

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3645990

The high-frequency major histocompatibility complex class I allele Mamu-B*17 is associated with control of simian immunodeficiency virus SIVmac239 replication

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3645990

Cytolytic CD8+ T cells directed against a cryptic epitope derived from a retroviral alternative reading frame confer disease protection

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3645990

Selective escape from CD8+ T-cell responses represents a major driving force of human immunodeficiency virus type 1 (HIV-1) sequence diversity and reveals constraints on HIV-1 evolution

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3645990

A dominant role for CD8+-T-lymphocyte selection in simian immunodeficiency virus sequence variation

7 July 2018

1 reference

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Identification of cryptic MHC I-restricted epitopes encoded by HIV-1 alternative reading frames

7 July 2018

1 reference

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Extraepitopic compensatory substitutions partially restore fitness to simian immunodeficiency virus variants that escape from an immunodominant cytotoxic-T-lymphocyte response

7 July 2018

1 reference

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The influence of HLA genotype on AIDS

7 July 2018

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The Bioperl toolkit: Perl modules for the life sciences

7 July 2018

1 reference

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Clustered mutations in HIV-1 gag are consistently required for escape from HLA-B27-restricted cytotoxic T lymphocyte responses.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3645990

HLA B*5701 is highly associated with restriction of virus replication in a subgroup of HIV-infected long term nonprogressors

7 July 2018

1 reference

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Control of viremia in simian immunodeficiency virus infection by CD8+ lymphocytes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3645990

Administration of an anti-CD8 monoclonal antibody interferes with the clearance of chimeric simian/human immunodeficiency virus during primary infections of rhesus macaques

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3645990

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3645990

Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3645990

Highly sensitive SIV plasma viral load assay: practical considerations, realistic performance expectations, and application to reverse engineering of vaccines for AIDS.

7 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0061383

Acute phase cytotoxic T lymphocyte escape is a hallmark of simian immunodeficiency virus infection

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0061383

Reversion of CTL escape–variant immunodeficiency viruses in vivo

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0061383

Characterization of recombinant human interleukin-2 with micromethods

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23671565

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Late escape from an immunodominant cytotoxic T-lymphocyte response associated with progression to AIDS

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23671565

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0061383

1 reference

release_6wgjzdnwifa2ng6swbuscis6qi

4 August 2017

0 references

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/6wgjzdnwifa2ng6swbuscis6qi

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMCID

3645990

1 reference

4 August 2017

1 reference